{"id":"W2169749255","doi":"10.1128/jcm.41.8.3784-3789.2003","title":"Vaginal Swabs Are Appropriate Specimens for Diagnosis of Genital Tract Infection with <i>Chlamydia trachomatis</i>","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":175,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University; St. Joseph’s Healthcare Hamilton","funders":"","keywords":"Nucleic Acid Amplification Tests; Chlamydia trachomatis; Medicine; Asymptomatic; Chlamydia; Sexually transmitted disease; Sex organ; Ligase chain reaction; Vagina; Chlamydia trachomatis infection; Trichomoniasis; Internal medicine; Gynecology; Virology; Polymerase chain reaction; Surgery; Immunology; Biology; Syphilis","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003274336,0.0002493679,0.001146841,0.000305209,0.0001273514,0.00001397885,0.0002341647,0.0005603801,0.0004432893],"category_scores_gemma":[0.003036086,0.0001781456,0.0005545919,0.0002551537,0.0007527675,0.000202543,0.00002727285,0.001200787,0.00006973368],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005854573,"about_ca_system_score_gemma":0.00030531,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001694704,"about_ca_topic_score_gemma":0.00002558547,"domain_scores_codex":[0.9959846,0.001315286,0.00181962,0.0003908341,0.00004377325,0.0004459091],"domain_scores_gemma":[0.9943751,0.002366411,0.001843847,0.0003355333,0.001012606,0.0000664679],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001654669,0.00308245,0.7257223,0.00007274969,0.001207954,0.00001674741,0.00008069475,0.00005101356,0.2578402,0.0004501363,0.002959616,0.006861478],"study_design_scores_gemma":[0.009029776,0.006345392,0.6121989,0.0001322564,0.0004507703,0.005989366,0.0001315738,5.410503e-7,0.2416979,0.0008667594,0.1227737,0.0003830636],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9938501,0.00111006,0.001919044,0.0002522418,0.001810532,0.0005184413,0.00008120892,0.00001581883,0.0004425704],"genre_scores_gemma":[0.9969546,0.0004769958,0.00184063,0.00006294414,0.0002554223,0.00003315342,0.00001934712,0.00003029315,0.0003266259],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1198141,"threshold_uncertainty_score":0.7264568,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05181126584998693,"score_gpt":0.3623928573664074,"score_spread":0.3105815915164205,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}