{"id":"W2170066264","doi":"10.7554/elife.01123","title":"A genome-to-genome analysis of associations between human genetic variation, HIV-1 sequence diversity, and viral control","year":2013,"lang":"en","type":"article","venue":"eLife","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":207,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; AIDS Vancouver; Simon Fraser University","funders":"National Cancer Institute; Ministerio de Ciencia e Innovación; Magyar Tudományos Akadémia; Canadian Institutes of Health Research; Eidgenössische Technische Hochschule Zürich; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Michael Smith Health Research BC; National Institute of Allergy and Infectious Diseases; Bill and Melinda Gates Foundation","keywords":"Genome; Biology; Genetic variation; Genetics; Human genome; Human genetic variation; Genetic diversity; Human immunodeficiency virus (HIV); Computational biology; Evolutionary biology; Sequence (biology); Diversity (politics); Virology; Gene; Population; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002390373,0.0003240785,0.0004326321,0.001151747,0.0005063955,0.0005292393,0.0003039406,0.0005582575,0.001922414],"category_scores_gemma":[0.005399899,0.0002635,0.0006016401,0.001375799,0.0006810708,0.0002671574,0.0007074391,0.0007194675,0.0001619281],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002172818,"about_ca_system_score_gemma":0.0003282859,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001945414,"about_ca_topic_score_gemma":0.003221596,"domain_scores_codex":[0.9985554,0.0008295475,0.00003620268,0.0004071537,0.00009044608,0.00008123284],"domain_scores_gemma":[0.9965473,0.002758608,0.0001848854,0.000299021,0.0000779906,0.0001322986],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.002080649,0.0002686336,0.8180387,0.0002538484,0.003850339,0.001150819,0.0007807371,0.01054545,0.09729446,0.002150624,0.001221219,0.06236454],"study_design_scores_gemma":[0.0001235027,0.0007565365,0.9665498,0.00001910711,0.0006603649,0.001491887,0.0002657128,0.01788722,0.006741808,0.003047537,0.002421902,0.00003470144],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9872376,0.0004215715,0.01026608,0.0001351356,0.00001026049,0.00003618026,0.001227094,0.00008760981,0.0005785566],"genre_scores_gemma":[0.985276,0.0001332003,0.01320787,0.00008662137,0.00001136025,0.00003905113,0.001005638,0.0000203596,0.0002200204],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002390373,"threshold_uncertainty_score":0.01264161,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02284634425403633,"score_gpt":0.2650483952128309,"score_spread":0.2422020509587945,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}