{"id":"W2170066264","doi":"10.7554/elife.01123","title":"A genome-to-genome analysis of associations between human genetic variation, HIV-1 sequence diversity, and viral control","year":2013,"lang":"en","type":"article","venue":"eLife","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":207,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; AIDS Vancouver; Simon Fraser University","funders":"National Cancer Institute; Ministerio de Ciencia e Innovación; Magyar Tudományos Akadémia; Canadian Institutes of Health Research; Eidgenössische Technische Hochschule Zürich; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Michael Smith Health Research BC; National Institute of Allergy and Infectious Diseases; Bill and Melinda Gates Foundation","keywords":"Genome; Biology; Genetic variation; Genetics; Human genome; Human genetic variation; Genetic diversity; Human immunodeficiency virus (HIV); Computational biology; Evolutionary biology; Sequence (biology); Diversity (politics); Virology; Gene; Population; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001333491,0.00008174957,0.0002764402,0.0002334138,0.0004493547,0.00001197422,0.0001350022,0.0000778883,0.0004800213],"category_scores_gemma":[0.00004779694,0.00007515419,0.00006819646,0.0002435866,0.00007287603,0.00005615644,0.0002022517,0.0000761088,0.0006084274],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006536452,"about_ca_system_score_gemma":0.00002418703,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001273197,"about_ca_topic_score_gemma":0.00006907564,"domain_scores_codex":[0.9992149,0.000134588,0.0001881075,0.0001787657,0.00006052175,0.0002230411],"domain_scores_gemma":[0.9994674,0.00009413886,0.00008187615,0.0001579252,0.0001440166,0.00005467578],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000004913771,0.00005495874,0.8771676,0.000002160634,0.003132952,0.000001268042,0.001322247,0.00005702187,0.1180074,0.00005978714,0.00008249259,0.0001072628],"study_design_scores_gemma":[0.0007172061,0.0001171787,0.9979387,9.727451e-7,0.0005562248,2.98578e-7,0.00002173343,0.000004723842,0.0002348702,0.00003937376,0.0003015491,0.00006715349],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9970043,0.0002363836,0.0007196161,0.0003101611,0.00001263214,0.0002949481,0.001266535,0.00001636319,0.000139118],"genre_scores_gemma":[0.9983817,0.00001791047,0.0001023426,0.00007262819,0.00001607609,0.00002177849,0.000865137,0.000004058018,0.0005184196],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1207712,"threshold_uncertainty_score":0.7820306,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02284634425403633,"score_gpt":0.2650483952128309,"score_spread":0.2422020509587945,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}