{"id":"W2170283197","doi":"10.1093/database/bat026","title":"The PhosphoGRID Saccharomyces cerevisiae protein phosphorylation site database: version 2.0 update","year":2013,"lang":"en","type":"article","venue":"Database","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":108,"is_retracted":false,"has_abstract":true,"ca_institutions":"Lunenfeld-Tanenbaum Research Institute; Université de Montréal; Institute for Research in Immunology and Cancer; University of British Columbia","funders":"Biotechnology and Biological Sciences Research Council; Canadian Cancer Society Research Institute; Canadian Institutes of Health Research; National Center for Research Resources; Directorate for Biological Sciences; National Institutes of Health; Wellcome Trust","keywords":"Phosphorylation; Proteome; Saccharomyces cerevisiae; Computational biology; Protein phosphorylation; Protein function; Database; Function (biology); Biology; Yeast; Bioinformatics; Computer science; Biochemistry; Protein kinase A; Cell biology; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001382503,0.003367448,0.002813245,0.006057416,0.0009204557,0.003114786,0.003232062,0.001151401,0.01388236],"category_scores_gemma":[0.002311794,0.001594007,0.001332375,0.00928033,0.0003012375,0.001962154,0.002045474,0.00177582,0.02434727],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001152084,"about_ca_system_score_gemma":0.002905627,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.009293183,"about_ca_topic_score_gemma":0.009853871,"domain_scores_codex":[0.9994596,0.00007605908,0.0001037125,0.000119633,0.0001706717,0.00007043431],"domain_scores_gemma":[0.9987502,0.0001637356,0.0001851514,0.0003330177,0.0003315416,0.0002362582],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.002471796,0.0001573779,0.005019126,0.006536298,0.0005257468,0.0004421557,0.000166391,0.003577404,0.01617139,0.003933766,0.8946664,0.06633218],"study_design_scores_gemma":[0.0004746121,0.0000744069,0.008826509,0.0003706548,0.0003526553,0.0005605058,0.00007374216,0.003310498,0.007156311,0.004404395,0.9742604,0.0001353513],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.005712513,0.003202908,0.006124937,0.0002615788,0.000213713,0.0001108537,0.9566182,0.02333954,0.004415735],"genre_scores_gemma":[0.003338701,0.001095622,0.005721063,0.00007992482,0.00002122998,0.0001039813,0.9874408,0.0014537,0.0007449024],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.01388236,"threshold_uncertainty_score":0.04644114,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007943784022554383,"score_gpt":0.2427444477371843,"score_spread":0.23480066371463,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}