{"id":"W2170286002","doi":"10.1002/prot.22630","title":"Solution NMR structures of proteins VPA0419 from <i>Vibrio parahaemolyticus</i> and yiiS from <i>Shigella flexneri</i> provide structural coverage for protein domain family PFAM 04175","year":2009,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Enzyme Structure and Function","field":"Materials Science","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Structural Genomics Consortium","funders":"National Institute of General Medical Sciences","keywords":"Shigella flexneri; Vibrio parahaemolyticus; Shigella; Vibrio; Microbiology; Domain (mathematical analysis); Protein family; Biology; Computational biology; Genetics; Bacteria; Escherichia coli; Salmonella; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002532353,0.000695587,0.000786578,0.0001871646,0.0005595521,0.000381368,0.0002793829,0.0005229427,0.0001283446],"category_scores_gemma":[0.0001077165,0.0005371922,0.0001505513,0.0002725285,0.0003100079,0.001092953,0.0001165588,0.0003892557,0.000004454261],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000901521,"about_ca_system_score_gemma":0.0001436572,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005019371,"about_ca_topic_score_gemma":0.0001674958,"domain_scores_codex":[0.9967553,0.0001052834,0.001155696,0.0006870705,0.0006641547,0.0006325046],"domain_scores_gemma":[0.9979348,0.00007775311,0.0009009562,0.0005740717,0.0002585409,0.0002539408],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001330922,0.00002274892,0.0002632665,0.0003142642,0.00006321669,0.000001299641,0.001153781,0.0000796366,0.9677506,0.00296002,0.0003953355,0.02566491],"study_design_scores_gemma":[0.006555087,0.002924551,0.0247411,0.0003537739,0.0003620354,0.0000476,0.001000702,0.005448344,0.6948791,0.2556449,0.00641666,0.001626158],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9192011,0.0006099353,0.07283336,0.0002764249,0.0006300266,0.003963852,0.002059623,0.0002014903,0.0002241321],"genre_scores_gemma":[0.8879999,0.00002697553,0.1098656,0.0007474298,0.0005666223,0.0000934432,0.0005942599,0.00003859153,0.00006717791],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2728716,"threshold_uncertainty_score":0.9997079,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009068422789025593,"score_gpt":0.2107133427378689,"score_spread":0.2016449199488433,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}