{"id":"W2170382524","doi":"10.1093/nar/gkq869","title":"Pseudomonas Genome Database: improved comparative analysis and population genomics capability for Pseudomonas genomes","year":2010,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":617,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University; University of British Columbia","funders":"Medizinischen Hochschule Hannover","keywords":"Biology; Genome; Comparative genomics; Genomics; Population; Genetics; Computational biology; Population genomics; Genome project; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003288982,0.001829051,0.002610272,0.006086411,0.001691355,0.002154856,0.00302552,0.001224343,0.01494401],"category_scores_gemma":[0.006786884,0.001171439,0.001620653,0.009089219,0.0003081941,0.002691998,0.002796726,0.002142939,0.01217038],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009522162,"about_ca_system_score_gemma":0.002282506,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003759305,"about_ca_topic_score_gemma":0.003843229,"domain_scores_codex":[0.9983717,0.0003364501,0.0001913847,0.0003872836,0.0005708306,0.0001424914],"domain_scores_gemma":[0.9981389,0.0004057664,0.0001775798,0.0004892565,0.0005260175,0.0002624995],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00986964,0.001235437,0.01404647,0.009700876,0.001319178,0.001939423,0.001367462,0.009410883,0.1988926,0.0197308,0.4613127,0.2711746],"study_design_scores_gemma":[0.002327948,0.0006593025,0.03711027,0.0005879433,0.0008652803,0.002491132,0.0005350294,0.03180917,0.05017507,0.01438457,0.8585448,0.000509497],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"software","genre_scores_codex":[0.04651668,0.003335661,0.1181002,0.0007869841,0.000401487,0.001050206,0.7387081,0.07229847,0.01880225],"genre_scores_gemma":[0.035494,0.001539432,0.1840071,0.0001779031,0.00008472503,0.001133492,0.7708185,0.005007705,0.001737178],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.01494401,"threshold_uncertainty_score":0.04999274,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0405987401472503,"score_gpt":0.3432319764053814,"score_spread":0.3026332362581312,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}