{"id":"W2170483053","doi":"10.1128/jcm.40.7.2632-2634.2002","title":"Accuracy of Results Obtained by Performing a Second Ligase Chain Reaction Assay and PCR Analysis on Urine Samples with Positive or Near-Cutoff Results in the LCx Test for <i>Chlamydia trachomatis</i>","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":27,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University; St. Joseph’s Healthcare Hamilton; Hamilton Regional Laboratory Medicine Program","funders":"","keywords":"Chlamydia trachomatis; Ligase chain reaction; Chlamydia; Chlamydiales; Nucleic Acid Amplification Tests; Urine; Chlamydiaceae; Reproducibility; Polymerase chain reaction; Biology; Virology; Medicine; Chromatography; Internal medicine; Chemistry; Immunology; Multiplex polymerase chain reaction; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0150205,0.001006629,0.0008114854,0.002297312,0.0004087515,0.00201285,0.0008859631,0.001219979,0.0008656609],"category_scores_gemma":[0.04486841,0.0005783544,0.0009954012,0.0008684269,0.001350548,0.0009374379,0.0008838957,0.0005945219,0.00137677],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008668503,"about_ca_system_score_gemma":0.0005577985,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003122977,"about_ca_topic_score_gemma":0.003548439,"domain_scores_codex":[0.9773955,0.006977213,0.003678918,0.004131864,0.006518953,0.001297467],"domain_scores_gemma":[0.9762235,0.01127846,0.003732981,0.003064303,0.005195696,0.000505203],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.002226414,0.000132967,0.8707087,0.0003643552,0.0004702927,0.0003302809,0.0007843382,0.001025503,0.07153217,0.0001780482,0.0004228763,0.05182407],"study_design_scores_gemma":[0.00007295953,0.001282285,0.8424415,0.0001871499,0.0005107979,0.002879708,0.0004350208,0.01260207,0.1370135,0.0002934991,0.002210771,0.0000706796],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.967786,0.003044078,0.02188492,0.0001563679,0.0002021695,0.00007760213,0.0005134,0.0005616597,0.005773823],"genre_scores_gemma":[0.9859831,0.0002930593,0.0122203,0.0001363015,0.00003635776,0.00003493418,0.0005015617,0.00005526708,0.0007391903],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0150205,"threshold_uncertainty_score":0.0794369,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04837433130097099,"score_gpt":0.35148074922809,"score_spread":0.303106417927119,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}