{"id":"W2170483053","doi":"10.1128/jcm.40.7.2632-2634.2002","title":"Accuracy of Results Obtained by Performing a Second Ligase Chain Reaction Assay and PCR Analysis on Urine Samples with Positive or Near-Cutoff Results in the LCx Test for <i>Chlamydia trachomatis</i>","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":27,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University; St. Joseph’s Healthcare Hamilton; Hamilton Regional Laboratory Medicine Program","funders":"","keywords":"Chlamydia trachomatis; Ligase chain reaction; Chlamydia; Chlamydiales; Nucleic Acid Amplification Tests; Urine; Chlamydiaceae; Reproducibility; Polymerase chain reaction; Biology; Virology; Medicine; Chromatography; Internal medicine; Chemistry; Immunology; Multiplex polymerase chain reaction; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.006880185,0.0002361325,0.001051147,0.0004018087,0.0002006546,0.00002894925,0.0003061773,0.0004239844,0.00007199535],"category_scores_gemma":[0.01939051,0.0001331931,0.0002930602,0.0006294061,0.0007283657,0.0001939717,0.000040699,0.001314286,0.00000881159],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005660168,"about_ca_system_score_gemma":0.0001293262,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007863951,"about_ca_topic_score_gemma":0.0003160707,"domain_scores_codex":[0.9953715,0.001595475,0.002111903,0.0004822449,0.00005324436,0.0003856975],"domain_scores_gemma":[0.9714369,0.02583452,0.001765687,0.0004103738,0.0005052467,0.00004728915],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0417299,0.005077999,0.02678987,0.00007180395,0.003339795,0.00005875099,0.002233366,0.00007427745,0.8573433,0.00004487006,0.01605651,0.04717956],"study_design_scores_gemma":[0.04807482,0.03847921,0.6422508,0.0005322676,0.001977132,0.006413532,0.002048552,0.0002466175,0.1654853,0.0001214833,0.09346126,0.0009090588],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9942815,0.0006017099,0.0001208798,0.002994572,0.0001690238,0.0005821465,0.0009904044,0.000007989894,0.0002518215],"genre_scores_gemma":[0.9978268,0.0005087462,0.0004682024,0.0002394074,0.0001124291,0.00001658339,0.0001683738,0.00001535075,0.0006441104],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.691858,"threshold_uncertainty_score":0.9888696,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04837433130097099,"score_gpt":0.35148074922809,"score_spread":0.303106417927119,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}