{"id":"W2170543480","doi":"10.3201/eid1108.041354","title":"<i>Coxiella burnetii</i> Genotyping","year":2005,"lang":"en","type":"article","venue":"Emerging infectious diseases","topic":"Yersinia bacterium, plague, ectoparasites research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":252,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Irkutsk State University","keywords":"Coxiella burnetii; Q fever; Genotyping; Biology; Typing; Multilocus sequence typing; Rickettsiaceae; Intergenic region; Phylogenetic tree; Genetics; Molecular epidemiology; Rickettsiales; Genotype; Virology; Microbiology; Gene; Genome","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009871837,0.0002026624,0.0001516048,0.0001008064,0.0002013422,0.00006952866,0.0002018281,0.0001005845,0.0002890582],"category_scores_gemma":[0.0001519921,0.0002154857,0.0001405743,0.0001729863,0.0000784422,0.00001078861,0.0001484665,0.0001221074,0.0002344301],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004657463,"about_ca_system_score_gemma":0.00009100795,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003538066,"about_ca_topic_score_gemma":0.00006231619,"domain_scores_codex":[0.9986386,0.00007739291,0.0002006819,0.0004272277,0.0001956268,0.0004604216],"domain_scores_gemma":[0.9992056,0.0000225468,0.00006283489,0.0004035296,0.00009517264,0.0002103513],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001468374,0.0004208078,0.227081,0.00007129294,0.0002104451,0.00001859656,0.0001180756,0.003141823,0.7219964,0.0001240338,0.02811931,0.01855141],"study_design_scores_gemma":[0.00157246,0.0004115353,0.08208008,0.00004399758,0.00008890915,0.0001030221,0.00005175238,0.0007048709,0.1189485,0.00006637983,0.7950087,0.0009198481],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9867228,0.002076177,0.0004275452,0.0003314443,0.0001994839,0.0001830882,0.00002580106,0.0001057742,0.009927846],"genre_scores_gemma":[0.9963983,0.0003145124,0.000127668,0.0007654803,0.001031265,0.00003208945,0.0001233137,0.00004422787,0.001163137],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7668893,"threshold_uncertainty_score":0.8787251,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005687837333241672,"score_gpt":0.2642784009477214,"score_spread":0.2585905636144797,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}