{"id":"W2170596217","doi":"10.1111/j.1471-8286.2006.01470.x","title":"A minimalist barcode can identify a specimen whose DNA is degraded","year":2006,"lang":"en","type":"article","venue":"Molecular Ecology Notes","topic":"Identification and Quantification in Food","field":"Biochemistry, Genetics and Molecular Biology","cited_by":554,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"","keywords":"Barcode; DNA barcoding; Biology; Identification (biology); Mitochondrial DNA; Computational biology; DNA; Genetics; Gene; Evolutionary biology; Ecology; Computer science","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001618369,0.0002302115,0.0002023508,0.00011787,0.0001781821,0.00008412846,0.0003520035,0.0002763562,0.0002522],"category_scores_gemma":[0.0001486847,0.0002565566,0.0001702325,0.0001792445,0.0002166359,0.000004952731,0.0001073875,0.0001099806,0.0002197815],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003117063,"about_ca_system_score_gemma":0.0001009084,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009439527,"about_ca_topic_score_gemma":0.0004754317,"domain_scores_codex":[0.9982709,0.0001343236,0.0004054713,0.0006395272,0.000167579,0.000382233],"domain_scores_gemma":[0.9988774,0.00002354496,0.000170603,0.0006731926,0.000166408,0.00008884807],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002225204,0.0001487369,0.00694422,0.00001126073,0.00006323589,0.00001555833,0.00003893199,0.0000115039,0.9730783,0.002280228,0.01726079,0.000125036],"study_design_scores_gemma":[0.0005375939,0.00008538079,0.07863652,0.00000429851,0.00004261045,0.00002800123,0.00003200768,0.00003196405,0.8790024,0.0005563908,0.04075555,0.0002872825],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9909941,0.0003410842,0.001929645,0.004115929,0.0003395534,0.0002888708,0.00007256169,0.00004394815,0.001874295],"genre_scores_gemma":[0.9927024,0.00002186101,0.0009825114,0.001755016,0.0001616268,0.00009084637,0.0006646521,0.00004311038,0.003577927],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09407585,"threshold_uncertainty_score":0.9999887,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01435642703819765,"score_gpt":0.2707885736603767,"score_spread":0.256432146622179,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}