{"id":"W2170645178","doi":"10.1093/molbev/msi065","title":"Impact of Taxon Sampling on the Estimation of Rates of Evolution at Sites","year":2004,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Plant and animal studies","field":"Agricultural and Biological Sciences","cited_by":31,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University; Canadian Institute for Advanced Research","funders":"Natural Sciences and Engineering Research Council of Canada; Genome Atlantic","keywords":"Biology; Taxon; Evolutionary biology; Sampling (signal processing); Estimation; Ecology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001122841,0.00006167325,0.0001143796,0.00001114272,0.00008827722,0.000001389117,0.00004427576,0.00006185436,0.000008749893],"category_scores_gemma":[0.00007620479,0.00002064648,0.00006202621,0.0001050958,0.0001314327,0.00001838784,0.00002929007,0.00003093284,0.000001231226],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002990001,"about_ca_system_score_gemma":0.000004287509,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004094596,"about_ca_topic_score_gemma":0.0001569813,"domain_scores_codex":[0.999619,0.00004026921,0.0001247008,0.00008976169,0.00004305148,0.00008322534],"domain_scores_gemma":[0.9997364,0.00008314419,0.0001142405,0.00001612507,0.00003881783,0.00001124076],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00006645342,0.00002801477,0.0948094,0.000004247185,0.00001830547,7.777144e-8,0.00001611209,0.0004945109,0.8969383,0.007191778,0.000005158181,0.000427679],"study_design_scores_gemma":[0.00008101814,0.0006808428,0.9188733,0.00002622643,0.00001081867,0.000001823333,0.00002959059,0.000166255,0.0711987,0.008887625,0.000002855573,0.00004090367],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.998338,0.0006890712,0.0006521533,0.0001384556,0.000008593186,0.00007716803,0.00004089062,0.00000504574,0.00005060602],"genre_scores_gemma":[0.9998316,0.00003626054,0.0000814725,0.000005509436,0.00001035729,0.000002349415,0.00002998317,2.673598e-7,0.000002163776],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8257396,"threshold_uncertainty_score":0.08419389,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03879991850276729,"score_gpt":0.2737211810853937,"score_spread":0.2349212625826264,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}