{"id":"W2170721195","doi":"10.1371/journal.pone.0034990","title":"The Origin of Malarial Parasites in Orangutans","year":2012,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Malaria Research and Control","field":"Medicine","cited_by":42,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University; The Scarborough Hospital; University of Toronto","funders":"National Institute of General Medical Sciences; National Institutes of Health","keywords":"Biology; Phylogenetic tree; Primate; Lineage (genetic); Circumsporozoite protein; Old World; Parasite hosting; Plasmodium (life cycle); Phylogenetics; Evolutionary biology; Malaria; Genome; Haplotype; Monophyly; Plasmodium falciparum; Zoology; Genetics; Clade; Gene; Immunology; Ecology; Genotype","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003849482,0.00004815836,0.0001657381,0.00004128695,0.00002516762,0.000006184113,0.00006899646,0.00003703193,0.0002697969],"category_scores_gemma":[0.0004445713,0.0000298705,0.00002979687,0.0001178485,0.00004586787,0.00004239893,0.00001630006,0.0001477649,0.00005815945],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002055931,"about_ca_system_score_gemma":0.0000532253,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007905668,"about_ca_topic_score_gemma":0.00004425035,"domain_scores_codex":[0.9991709,0.00005151087,0.0001335685,0.00005787257,0.0003124234,0.0002737456],"domain_scores_gemma":[0.9994708,0.000170782,0.00002553355,0.0001822096,0.00005077359,0.00009984727],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001706275,0.002748142,0.7802738,0.000132294,0.0003177047,0.00001405438,0.000297485,2.065869e-7,0.1938802,0.01827458,0.0003302246,0.002025123],"study_design_scores_gemma":[0.006448981,0.0005879315,0.9156448,0.0002806067,0.0002506214,0.000006058377,0.0001958761,0.000517299,0.07260019,0.0005294989,0.00279403,0.0001440991],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9883709,0.0009088303,0.00001363376,0.005115808,0.00002773834,0.0003805192,0.000004375491,0.00001155033,0.00516663],"genre_scores_gemma":[0.9980837,0.00008110648,0.0002723367,0.00006770273,0.0002977396,0.00003374892,0.000003086177,0.000006641946,0.001154004],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.135371,"threshold_uncertainty_score":0.2954087,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05554884049873248,"score_gpt":0.2983823550283689,"score_spread":0.2428335145296364,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}