{"id":"W2170856052","doi":"10.1126/science.aad0408","title":"The <i>Symbiodinium kawagutii</i> genome illuminates dinoflagellate gene expression and coral symbiosis","year":2015,"lang":"en","type":"article","venue":"Science","topic":"Coral and Marine Ecosystems Studies","field":"Environmental Science","cited_by":471,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"National Institute of Allergy and Infectious Diseases; National Natural Science Foundation of China; National Institutes of Health; National Science Foundation","keywords":"Symbiodinium; Dinoflagellate; Symbiosis; Coral; Biology; Gene; Genome; Zooxanthellae; Evolutionary biology; Genetics; Ecology; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007694909,0.0001181513,0.0001038251,0.00002067443,0.0008794442,0.0001334414,0.0004370582,0.00002162012,0.00002370283],"category_scores_gemma":[0.0000957429,0.00007017257,0.00002110071,0.00035593,0.001396035,0.0003235885,0.00134749,0.00006410869,0.0002172764],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009002275,"about_ca_system_score_gemma":0.00001876594,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001203032,"about_ca_topic_score_gemma":0.00004279853,"domain_scores_codex":[0.9986457,0.00002506351,0.0001425974,0.0003798158,0.0004138479,0.0003930209],"domain_scores_gemma":[0.9994045,0.00004224609,0.00006345129,0.0002565652,0.00002500679,0.0002082369],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00002217279,0.0000297573,0.1515177,0.000005331115,0.000003181786,0.000007701144,0.001061008,0.00001052011,0.8373261,0.00008548803,0.004267928,0.005663086],"study_design_scores_gemma":[0.0008022377,0.0004121874,0.5498945,0.0000340613,0.00002391842,0.00008046513,0.002505875,0.0009335946,0.2313754,0.003234844,0.2098792,0.0008238172],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9884607,0.0004971519,0.0000186038,0.0008484098,0.0004154802,0.0001502089,0.000003604188,0.000038617,0.00956727],"genre_scores_gemma":[0.9974872,0.0001364544,0.0002524404,0.0001278752,0.00003473124,0.00001229499,5.33818e-7,0.000004593232,0.001943877],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6059508,"threshold_uncertainty_score":0.6764063,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01355651145553537,"score_gpt":0.2104018321232179,"score_spread":0.1968453206676826,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}