{"id":"W2171162579","doi":"10.1128/jvi.01078-08","title":"Bioinformatic and Physical Characterizations of Genome-Scale Ordered RNA Structure in Mammalian RNA Viruses","year":2008,"lang":"en","type":"article","venue":"Journal of Virology","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":98,"is_retracted":false,"has_abstract":true,"ca_institutions":"Steacie Institute for Molecular Sciences; University of Ottawa","funders":"Wellcome Trust","keywords":"RNA; Biology; Virus; Virology; Genome; Nucleic acid structure; Viral replication; Genetics; RNA virus; Computational biology; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008582904,0.00009086986,0.0002434976,0.00009273703,0.00003350186,0.000003899618,0.0001206109,0.0001173678,0.00002736502],"category_scores_gemma":[0.00004280808,0.00007435512,0.00005785401,0.00006249562,0.00009686721,0.00001029418,0.00003794777,0.00009282754,9.823788e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000004721206,"about_ca_system_score_gemma":0.00004845572,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000003565668,"about_ca_topic_score_gemma":0.000007913253,"domain_scores_codex":[0.99933,0.0000628345,0.0003265451,0.0000800431,0.0000776985,0.0001228477],"domain_scores_gemma":[0.999474,0.00001294206,0.0002963441,0.0001122091,0.00005299088,0.00005151535],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001196029,0.00004496224,0.001312573,0.00001462689,0.000025028,0.000008357031,0.0003053281,0.00004409617,0.9971116,0.00002014951,0.00001290096,0.0009807277],"study_design_scores_gemma":[0.0007802075,0.0008951232,0.04662067,0.00001292164,0.00002363653,0.000410836,0.00007492102,0.0000636943,0.9490846,0.000390125,0.001525936,0.0001172755],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9984179,0.000241968,0.000990302,0.0001308858,0.0000620194,0.00006696114,0.00001855148,0.000001101381,0.00007032356],"genre_scores_gemma":[0.9980751,0.0002984818,0.001273697,0.0001863004,0.0001278112,0.00000133306,0.00000614561,0.000008452572,0.00002263186],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04802699,"threshold_uncertainty_score":0.3032114,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01033509448923819,"score_gpt":0.2310431111608525,"score_spread":0.2207080166716143,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}