{"id":"W2171162579","doi":"10.1128/jvi.01078-08","title":"Bioinformatic and Physical Characterizations of Genome-Scale Ordered RNA Structure in Mammalian RNA Viruses","year":2008,"lang":"en","type":"article","venue":"Journal of Virology","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":98,"is_retracted":false,"has_abstract":true,"ca_institutions":"Steacie Institute for Molecular Sciences; University of Ottawa","funders":"Wellcome Trust","keywords":"RNA; Biology; Virus; Virology; Genome; Nucleic acid structure; Viral replication; Genetics; RNA virus; Computational biology; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004962065,0.0001998674,0.0002580738,0.0009851763,0.0002643326,0.0004700903,0.0002417863,0.0003060598,0.0004161693],"category_scores_gemma":[0.001234115,0.0001810355,0.0004365104,0.0005561368,0.000393096,0.0003557703,0.0002561485,0.0003781354,0.0002221415],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002330148,"about_ca_system_score_gemma":0.000146813,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000283345,"about_ca_topic_score_gemma":0.0005576239,"domain_scores_codex":[0.9997918,0.00004321016,0.00002105429,0.00006373562,0.00006543432,0.00001472217],"domain_scores_gemma":[0.9993154,0.0002690856,0.0002099493,0.00007989544,0.00006755144,0.00005815261],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004438206,0.00006757829,0.02572474,0.0003438166,0.00006710953,0.0003022607,0.000281052,0.006335862,0.9477401,0.001608952,0.0001924341,0.0168923],"study_design_scores_gemma":[0.00007169131,0.000789069,0.4993324,0.0000925984,0.0001952408,0.002959261,0.0005934059,0.1988911,0.2821272,0.007048745,0.007790588,0.0001087664],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.973416,0.001221102,0.02362177,0.00007707847,0.000009865536,0.00003801901,0.000773382,0.0002145623,0.0006282019],"genre_scores_gemma":[0.9638819,0.0004348794,0.03350785,0.00005264954,0.00001353811,0.00005240983,0.001773174,0.00006259249,0.0002209223],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009851763,"threshold_uncertainty_score":0.002624214,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01033509448923819,"score_gpt":0.2310431111608525,"score_spread":0.2207080166716143,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}