{"id":"W2171315640","doi":"10.1128/ec.00312-12","title":"Complete Genome Sequences from Three Genetically Distinct Strains Reveal High Intraspecies Genetic Diversity in the Microsporidian Encephalitozoon cuniculi","year":2013,"lang":"en","type":"article","venue":"Eukaryotic Cell","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":62,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; Canadian Institute for Advanced Research","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; U.S. Department of Health and Human Services; National Institutes of Health; Compute Canada; Health Canada; U.S. Public Health Service; Canadian Institute for Advanced Research","keywords":"Biology; Encephalitozoon cuniculi; Genetics; Genome; Genetic diversity; Intergenic region; Nonsynonymous substitution; Genetic variation; Comparative genomics; Gene; Genomics; Microsporidia; Evolutionary biology; Population","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0001646839,0.0002329437,0.0002773529,0.00006587237,0.0004721847,0.00006097464,0.0005761879,0.0001764319,0.002835931],"category_scores_gemma":[0.00004814673,0.0001770755,0.00008717617,0.0001702837,0.0006316397,0.0000740142,0.000226558,0.0003544227,0.001806716],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007422161,"about_ca_system_score_gemma":0.00006650527,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01190602,"about_ca_topic_score_gemma":0.002231095,"domain_scores_codex":[0.9984778,0.0002239523,0.0003493988,0.0003731813,0.0000787279,0.0004969702],"domain_scores_gemma":[0.9988789,0.0004850728,0.00009818663,0.0004259059,0.00006618492,0.00004576714],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00001511683,0.0003929199,0.9180722,0.00001825968,0.00009025308,0.0000994449,0.001814015,0.000126519,0.07615685,0.0009817141,0.001398933,0.000833757],"study_design_scores_gemma":[0.0005824352,0.0001370721,0.9939179,0.00001302291,0.00007168973,0.00003013455,0.0004074943,0.00001367506,0.0005398092,0.003671876,0.0003829098,0.0002319234],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9937504,0.001077879,0.0006233643,0.0004054024,0.0006192423,0.0004606953,0.0003062044,0.00003500713,0.002721807],"genre_scores_gemma":[0.998208,0.0001006029,0.0007515207,0.0003241042,0.0001297355,0.00002259074,0.0002739322,0.00001039496,0.0001791607],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07584573,"threshold_uncertainty_score":0.9989705,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01925847683569717,"score_gpt":0.2122899334598075,"score_spread":0.1930314566241104,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}