{"id":"W2171486516","doi":"10.1128/aem.01036-12","title":"Genetic Diversity among Bacillus anthracis Soil Isolates at Fine Geographic Scales","year":2012,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacillus and Francisella bacterial research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"ca_institutions":"Defence Research and Development Canada","funders":"U.S. Army Medical Research Institute of Infectious Diseases; Army Research Institute for the Behavioral and Social Sciences; Defence Research and Development Canada","keywords":"Multiple Loci VNTR Analysis; Bacillus anthracis; Biology; Variable number tandem repeat; Typing; Genetic diversity; Outbreak; National park; Genotype; Multilocus sequence typing; Population; Veterinary medicine; Microbiology; Genetics; Ecology; Virology; Bacteria; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001889246,0.0001552372,0.0001700833,0.0009316441,0.0003422181,0.0003846846,0.0001294983,0.0001767008,0.0007006721],"category_scores_gemma":[0.0004271672,0.0001299589,0.00006131319,0.0005418009,0.0003299586,0.0001600079,0.0003077035,0.000159968,0.0001390682],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002345968,"about_ca_system_score_gemma":0.0001600421,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007701403,"about_ca_topic_score_gemma":0.02147031,"domain_scores_codex":[0.9997796,0.00003280106,0.00001220426,0.00008758403,0.00004302754,0.00004478515],"domain_scores_gemma":[0.9995734,0.00007661743,0.0001297834,0.00001927215,0.00009137022,0.0001095506],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001841669,0.00009156463,0.8994962,0.00001932225,0.00002388957,0.0001363075,0.001008142,0.0001692268,0.09334747,0.00004372061,0.00004379748,0.005436259],"study_design_scores_gemma":[0.000002923338,0.00006028164,0.9987869,0.000002232343,0.000004224346,0.00009182232,0.0003385102,0.00007926222,0.0005222608,0.000009407493,0.00010019,0.000002100481],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9997912,0.00001416866,0.00003798461,0.00000212953,2.97549e-7,0.000001836324,0.00005328309,7.728092e-7,0.00009834603],"genre_scores_gemma":[0.9993947,0.00002803602,0.000130305,0.000005150256,0.000001414999,0.0000048136,0.0002728785,8.597647e-7,0.0001619219],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.007701403,"threshold_uncertainty_score":0.01531315,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004771803505914986,"score_gpt":0.1771036168597653,"score_spread":0.1723318133538503,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}