{"id":"W2171517785","doi":"10.1111/1574-6976.12035","title":"Interactions in the microbiome: communities of organisms and communities of genes","year":2013,"lang":"en","type":"review","venue":"FEMS Microbiology Reviews","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":235,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada; Genome Atlantic; Canadian Institutes of Health Research; Killam Trusts; Dalhousie University; Canada Research Chairs","keywords":"Biology; Microbiome; Gene; Evolutionary biology; Metagenomics; Computational biology; Genetics; Ecology; Microbiology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0007914196,0.0004526956,0.002064364,0.0002028287,0.0001098092,0.00001624467,0.0008832545,0.0003874552,0.00009403081],"category_scores_gemma":[0.00002215412,0.0002901745,0.0003698196,0.0002095812,0.0007387915,0.000005449629,0.0004128474,0.0005119516,0.00002805727],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001977055,"about_ca_system_score_gemma":0.0001512566,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006400528,"about_ca_topic_score_gemma":0.002368184,"domain_scores_codex":[0.9962959,0.001844107,0.001326612,0.0002146514,0.00002011873,0.0002986531],"domain_scores_gemma":[0.9977296,0.0001693729,0.0009792018,0.0009973778,0.0000931553,0.00003127381],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001580893,0.0003771688,0.0003466863,0.03538373,0.0004125731,9.984208e-7,0.003068179,1.707069e-7,0.480177,0.00009437405,0.01694482,0.4631785],"study_design_scores_gemma":[0.0001455527,0.000136345,0.00001640153,0.004315848,0.0001867373,0.0004016841,0.0009262096,5.93264e-8,0.0004965629,0.000003650573,0.9931302,0.0002407525],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.007207196,0.9906816,0.000009178759,0.00003033825,0.0001798378,0.001408061,0.000373576,0.000003713312,0.0001064737],"genre_scores_gemma":[0.0007528951,0.9958351,0.0003916803,0.0001942666,0.00005946915,0.0001367524,0.002364415,0.0000374297,0.0002280402],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9761854,"threshold_uncertainty_score":0.9999551,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08813493713956067,"score_gpt":0.358972860643276,"score_spread":0.2708379235037154,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}