{"id":"W2171677430","doi":"10.1038/ncomms4549","title":"The Vibrio cholerae type VI secretion system employs diverse effector modules for intraspecific competition","year":2014,"lang":"en","type":"article","venue":"Nature Communications","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":207,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"National Institute of General Medical Sciences; National Institutes of Health; Alberta Innovates; University of Alberta; National Institute on Minority Health and Health Disparities; Canadian Institutes of Health Research; University of Rochester; University of Texas at Austin; University of Pennsylvania","keywords":"Vibrio cholerae; Effector; Pilus; Biology; Virulence; Cholera toxin; Type VI secretion system; Microbiology; Secretion; Gene; Pathogenicity island; Cholera; El Tor; Genetics; Bacteria; Cell biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003919692,0.0001138412,0.0001102351,0.0000287662,0.0008258022,0.00007644808,0.0006995023,0.0001889938,0.000001855805],"category_scores_gemma":[0.0004051779,0.00008706346,0.00007464052,0.00009870043,0.0001883194,0.000006036726,0.0003713769,0.0002629909,0.00001799295],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005558977,"about_ca_system_score_gemma":0.00002865524,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000007831884,"about_ca_topic_score_gemma":0.0003320519,"domain_scores_codex":[0.9990958,0.0002687484,0.0001440939,0.0001898172,0.0001148531,0.000186707],"domain_scores_gemma":[0.9980086,0.0002236601,0.00007593467,0.001291328,0.0003535079,0.00004694362],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000260251,0.0001017852,0.001300216,0.0001015606,0.0002409889,1.537391e-7,0.0001293361,0.00003614509,0.9115157,0.05843584,0.02164685,0.006231226],"study_design_scores_gemma":[0.0009784161,0.0004552023,0.03564757,0.00008172254,0.00005427877,0.000006660515,0.0003920483,0.00320312,0.01367502,0.0001296476,0.9450692,0.0003070984],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.963255,0.01122329,0.01076547,0.006415262,0.00157011,0.002378867,0.0003457233,0.000191402,0.003854919],"genre_scores_gemma":[0.9957438,0.001216281,0.001424362,0.00007184871,0.0002952254,0.0001588544,0.0009759277,0.00001892435,0.00009482387],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9234223,"threshold_uncertainty_score":0.6351486,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0170397212865667,"score_gpt":0.2963374124622571,"score_spread":0.2792976911756904,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}