{"id":"W2171918702","doi":"10.1128/aem.01127-08","title":"Multilocus Genotyping Assays for Single Nucleotide Polymorphism-Based Subtyping of <i>Listeria monocytogenes</i> Isolates","year":2008,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":161,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"","keywords":"Subtyping; Biology; Listeria monocytogenes; Genotyping; Genotype; Multilocus sequence typing; Genetics; Single-nucleotide polymorphism; Lineage (genetic); Population; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001272626,0.0005031363,0.0005876172,0.001224179,0.0002036729,0.0005333671,0.0005603427,0.0005647326,0.0006893878],"category_scores_gemma":[0.00329254,0.0004042849,0.0004954346,0.0006529926,0.0002029612,0.0002614178,0.0005102603,0.0007409313,0.0006664352],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003509563,"about_ca_system_score_gemma":0.0002223199,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006520402,"about_ca_topic_score_gemma":0.001782124,"domain_scores_codex":[0.9972219,0.0009622642,0.0002380581,0.0007016007,0.0006570679,0.0002190228],"domain_scores_gemma":[0.9975352,0.0008414768,0.0008378426,0.0002621571,0.0003747499,0.0001485657],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002506014,0.00008551822,0.01473065,0.00009932205,0.00006670102,0.00004989166,0.00009390782,0.0008341409,0.9655064,0.0001739299,0.0002220699,0.01788681],"study_design_scores_gemma":[0.00008900044,0.001059708,0.08354677,0.00006019573,0.0001781781,0.0007272249,0.00009954914,0.0214269,0.8863615,0.0003984218,0.005970642,0.0000819765],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7262001,0.001524402,0.2633339,0.0001711849,0.00007339491,0.0005533805,0.003955645,0.001621816,0.002566079],"genre_scores_gemma":[0.6560537,0.0006720077,0.3360536,0.0003455579,0.00004279306,0.0008097708,0.004376805,0.0001216049,0.001524194],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001272626,"threshold_uncertainty_score":0.006730437,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03607175980037249,"score_gpt":0.232862132174827,"score_spread":0.1967903723744545,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}