{"id":"W2172003470","doi":"10.1128/jvi.01843-09","title":"Inactivation of <i>Burkholderia cepacia</i> Complex Phage KS9 gp41 Identifies the Phage Repressor and Generates Lytic Virions","year":2009,"lang":"en","type":"article","venue":"Journal of Virology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":39,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research","keywords":"Lytic cycle; Biology; Prophage; Lysogenic cycle; Microbiology; Burkholderia cenocepacia; Temperateness; Siphoviridae; Bacteriophage; Burkholderia cepacia complex; Lysogen; Burkholderia; Virology; Phage therapy; Gene; Genetics; Bacteria; Virus; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002361572,0.00009446574,0.0002059152,0.00005939187,0.0001370089,0.00003433758,0.0001679845,0.0000577406,0.000835152],"category_scores_gemma":[0.00005153683,0.00006552708,0.00007572884,0.0001019439,0.0002282751,0.0003482842,0.00006022277,0.0001879695,0.00001485413],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003839519,"about_ca_system_score_gemma":0.000007331631,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006122924,"about_ca_topic_score_gemma":0.00004183673,"domain_scores_codex":[0.9991651,0.00010062,0.000381712,0.0001158462,0.00009714393,0.0001395982],"domain_scores_gemma":[0.9992729,0.00008111005,0.0004298482,0.000145887,0.00002451872,0.00004571921],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00005266508,0.00009299992,0.000167806,0.000002041883,0.00002155779,0.000008615047,0.0004391461,0.0001556107,0.9940178,0.00004233617,0.003582495,0.001416888],"study_design_scores_gemma":[0.0006965314,0.0005920677,0.534148,0.00001892237,0.0001025484,0.0006897087,0.0002320384,0.0003049223,0.4490525,0.001008906,0.01302695,0.0001268333],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9959072,0.0001315851,0.0003893873,0.002363191,0.0001900237,0.00008050686,0.000007023517,0.000004626616,0.0009264808],"genre_scores_gemma":[0.9982602,0.0001601596,0.000325058,0.0008108719,0.00008884195,0.00000101286,0.00000190824,0.000005485988,0.0003464562],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5449653,"threshold_uncertainty_score":0.9144329,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01245706199945033,"score_gpt":0.2541695290294805,"score_spread":0.2417124670300302,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}