{"id":"W2172198911","doi":"10.1086/431519","title":"Molecular and Clinical Epidemiology of CXCR4‐Using HIV‐1 in a Large Population of Antiretroviral‐Naive Individuals","year":2005,"lang":"en","type":"article","venue":"The Journal of Infectious Diseases","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":270,"is_retracted":false,"has_abstract":true,"ca_institutions":"St. Paul's Hospital; University of British Columbia","funders":"Michael Smith Health Research BC; Pfizer","keywords":"Epidemiology; Human immunodeficiency virus (HIV); Population; Molecular epidemiology; Virology; Medicine; Lentivirus; Viral disease; Immunology; Biology; Environmental health; Internal medicine; Genetics; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00132225,0.00008347463,0.0004731392,0.0001773939,0.0000473107,0.000001383793,0.00009001761,0.00009090243,0.00004535556],"category_scores_gemma":[0.00111452,0.00005313487,0.0001368765,0.00009991321,0.0002105241,0.00007516603,0.00005072061,0.0002139964,0.000005840956],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003555639,"about_ca_system_score_gemma":0.0000683237,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001473619,"about_ca_topic_score_gemma":0.00002357937,"domain_scores_codex":[0.9975355,0.001420111,0.0007398753,0.00007253942,0.00004282382,0.0001891991],"domain_scores_gemma":[0.9982223,0.0009407508,0.0006054147,0.000110849,0.00008478957,0.00003590717],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002140278,0.0005431258,0.9943095,0.00001579097,0.0003090625,0.000005758892,0.0001117274,0.0001756274,0.001916806,0.0001486615,0.00005628971,0.002193579],"study_design_scores_gemma":[0.002494097,0.0009130798,0.9945947,0.00007312803,0.0002008723,0.000107292,0.00007138185,0.00002220947,0.0009357014,0.0005049928,0.00003698823,0.0000455727],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9902659,0.009191306,0.0001556353,0.0001029995,0.00005693836,0.0001130088,0.00008288687,0.000003243606,0.00002809185],"genre_scores_gemma":[0.9992356,0.0006192054,0.00004243325,0.00005074355,0.00002451913,6.955294e-7,0.00001545705,0.000005264301,0.000006106065],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008969687,"threshold_uncertainty_score":0.2166777,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02753765568872999,"score_gpt":0.3586327817477715,"score_spread":0.3310951260590415,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}