{"id":"W2173350154","doi":"10.1111/cla.12133","title":"Plastid phylogenomics and molecular evolution of Alismatales","year":2015,"lang":"en","type":"article","venue":"Cladistics","topic":"Plant Diversity and Evolution","field":"Agricultural and Biological Sciences","cited_by":120,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Danmarks Frie Forskningsfond; National Science Foundation","keywords":"Biology; Phylogenomics; Monophyly; Sister group; Phylogenetic tree; Evolutionary biology; Plastid; Clade; Maximum parsimony; Molecular phylogenetics; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005180102,0.00003827311,0.00005885017,0.000004698114,0.00003466111,0.000006473479,0.00005379319,0.00004197771,0.0000049727],"category_scores_gemma":[0.00004988401,0.00001743608,0.00001321531,0.00005214328,0.00006200284,0.00002873261,0.00003616244,0.00002520861,0.000008320844],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002227821,"about_ca_system_score_gemma":0.000005617522,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007313836,"about_ca_topic_score_gemma":0.00005007258,"domain_scores_codex":[0.9997262,0.00001311423,0.00005769763,0.00006933823,0.00006373293,0.00006994091],"domain_scores_gemma":[0.999831,0.00003015492,0.00003160868,0.00001575291,0.00003399109,0.00005745432],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000141431,0.0001378641,0.06953584,0.00003619938,0.00003300118,0.00002488084,0.0002543963,0.0002648065,0.8660524,0.04568572,0.01334949,0.004483895],"study_design_scores_gemma":[0.000772809,0.0008095805,0.9035454,0.00005918095,0.0001390355,0.00008306608,0.003264911,0.00793515,0.01027513,0.02997029,0.04252705,0.0006183532],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985444,0.0002141025,0.0001641721,0.00007588453,0.00005995194,0.00002773141,0.0002117876,0.0000111036,0.0006908887],"genre_scores_gemma":[0.9996519,0.00001418661,0.0001911068,0.00001606904,0.00003409302,2.407264e-7,0.00007309438,1.611069e-7,0.00001915606],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8557773,"threshold_uncertainty_score":0.07110227,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02301454229898034,"score_gpt":0.1771793913551995,"score_spread":0.1541648490562191,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}