{"id":"W2173350154","doi":"10.1111/cla.12133","title":"Plastid phylogenomics and molecular evolution of Alismatales","year":2015,"lang":"en","type":"article","venue":"Cladistics","topic":"Plant Diversity and Evolution","field":"Agricultural and Biological Sciences","cited_by":120,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Danmarks Frie Forskningsfond; National Science Foundation","keywords":"Biology; Phylogenomics; Monophyly; Sister group; Phylogenetic tree; Evolutionary biology; Plastid; Clade; Maximum parsimony; Molecular phylogenetics; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003649947,0.0002080415,0.0001999818,0.001790775,0.0006092306,0.0005812022,0.0002485256,0.0003142863,0.0008229802],"category_scores_gemma":[0.0007756715,0.0001342431,0.0002484756,0.001259442,0.0003036796,0.0005235947,0.0004060115,0.0004179643,0.0001782339],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000571987,"about_ca_system_score_gemma":0.0002614031,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002225472,"about_ca_topic_score_gemma":0.003615801,"domain_scores_codex":[0.9998153,0.00002559899,0.00001267731,0.0000736944,0.00003552251,0.00003733019],"domain_scores_gemma":[0.9995827,0.0001043201,0.0001373758,0.00004843383,0.00007437226,0.00005276998],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007277732,0.00006726909,0.2743779,0.0002975644,0.000149003,0.0004868275,0.003558062,0.003387016,0.6367624,0.004391109,0.0001790959,0.07561591],"study_design_scores_gemma":[0.00002099514,0.0001454074,0.9717128,0.00008352276,0.00007071834,0.0006540624,0.001124476,0.007999068,0.01010211,0.001689574,0.006370687,0.00002662622],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980002,0.0004302451,0.0007148091,0.00003186279,0.000002057321,0.000003551181,0.0001152837,0.00001529199,0.0006866513],"genre_scores_gemma":[0.9980181,0.0002334685,0.00106098,0.00001835383,0.000003829557,0.000003541619,0.0004112441,0.000008512658,0.000241982],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002225472,"threshold_uncertainty_score":0.004424989,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02301454229898034,"score_gpt":0.1771793913551995,"score_spread":0.1541648490562191,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}