{"id":"W2174299610","doi":"10.1242/dev.125872","title":"4D atlas of the mouse embryo for precise morphological staging","year":2015,"lang":"en","type":"article","venue":"Development","topic":"Cell Image Analysis Techniques","field":"Biochemistry, Genetics and Molecular Biology","cited_by":72,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan; Hospital for Sick Children; University of Toronto","funders":"National Human Genome Research Institute; National Institutes of Health","keywords":"Biology; Embryo; Atlas (anatomy); Embryonic stem cell; Computational biology; Anatomy; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006341841,0.0006969735,0.0004821699,0.002721503,0.0004787468,0.001092146,0.0006193061,0.0006679931,0.007909327],"category_scores_gemma":[0.0007766378,0.0005903614,0.0007300886,0.001695061,0.0003766632,0.000554731,0.001094871,0.001237476,0.004316567],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006107436,"about_ca_system_score_gemma":0.001453922,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002131927,"about_ca_topic_score_gemma":0.004532853,"domain_scores_codex":[0.999627,0.0000471117,0.00003862684,0.00006830671,0.0001881742,0.00003082298],"domain_scores_gemma":[0.9996516,0.00005696298,0.00004841417,0.00009641722,0.0001108573,0.00003583317],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003426248,0.0000733996,0.006397608,0.001009151,0.0000961465,0.0008605332,0.0005821843,0.02129503,0.6916872,0.0343721,0.04911321,0.1941709],"study_design_scores_gemma":[0.00005401123,0.000258909,0.02628759,0.0002961171,0.0001715421,0.004565774,0.000182044,0.08411423,0.2846992,0.01218808,0.586955,0.0002275461],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.02740053,0.001873199,0.9309012,0.0002855702,0.0002477651,0.000367726,0.01944134,0.006199231,0.01328337],"genre_scores_gemma":[0.08708386,0.002952393,0.8778827,0.0001866883,0.00007094523,0.001337482,0.01873513,0.002167065,0.009583729],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.007909327,"threshold_uncertainty_score":0.02645934,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0226180896582044,"score_gpt":0.27209615516221,"score_spread":0.2494780655040056,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}