{"id":"W2174639998","doi":"10.1371/journal.pone.0137760","title":"Complex Population Structure and Virulence Differences among Serotype 2 Streptococcus suis Strains Belonging to Sequence Type 28","year":2015,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":89,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; University of Toronto; McGill University and Génome Québec Innovation Centre; Public Health Ontario","funders":"Natural Sciences and Engineering Research Council of Canada; McGill University; University of Toronto; Génome Québec; U.S. Department of Agriculture","keywords":"Virulence; Biology; Streptococcus suis; Multilocus sequence typing; Serotype; Phylogenetic tree; Clade; Genetics; Population; Genome; Phylogenetics; Whole genome sequencing; Strain (injury); Genotype; Virology; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002913,0.0001798669,0.0002482254,0.0008229025,0.0002638791,0.0004535005,0.0001406985,0.0002168536,0.0005131547],"category_scores_gemma":[0.0008162557,0.0001180309,0.0001442487,0.0004326424,0.0002734608,0.0001265225,0.0002414905,0.0001758193,0.00008586323],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000232089,"about_ca_system_score_gemma":0.0002797977,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004671453,"about_ca_topic_score_gemma":0.005522476,"domain_scores_codex":[0.9996117,0.00007259363,0.00002756936,0.0001288785,0.00008296488,0.00007638004],"domain_scores_gemma":[0.9996566,0.00009881362,0.0001031807,0.00003425855,0.00005814806,0.00004898819],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000398925,0.00009300213,0.8151093,0.00002114316,0.0001103,0.0003236691,0.001309343,0.0008014456,0.1739412,0.0002206031,0.00008948091,0.007581577],"study_design_scores_gemma":[0.000009030929,0.0002252197,0.9914381,0.000005082481,0.00003015243,0.0005785298,0.00049465,0.002578806,0.004138687,0.0001432928,0.0003465584,0.0000119909],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.999643,0.00002254242,0.0002032811,0.000003382783,3.653273e-7,0.0000036601,0.00003116623,0.000001571887,0.00009111135],"genre_scores_gemma":[0.999488,0.00002378962,0.0002400937,0.000005188412,0.00000122165,0.000004121769,0.00017683,0.000001660165,0.00005911556],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004671453,"threshold_uncertainty_score":0.009288549,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1485131290050396,"score_gpt":0.3165964912189871,"score_spread":0.1680833622139475,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}