{"id":"W2174770506","doi":"10.1093/gbe/evv237","title":"The<i>Physarum polycephalum</i>Genome Reveals Extensive Use of Prokaryotic Two-Component and Metazoan-Type Tyrosine Kinase Signaling","year":2015,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Slime Mold and Myxomycetes Research","field":"Engineering","cited_by":100,"is_retracted":false,"has_abstract":true,"ca_institutions":"Carleton University; Western University","funders":"National Institute of General Medical Sciences; Biotechnology and Biological Sciences Research Council; National Human Genome Research Institute; Bundesministerium für Bildung und Forschung; Austrian Science Fund; International Max Planck Research School for Environmental, Cellular and Molecular Microbiology; Wellcome Trust; National Institutes of Health; National Science Foundation","keywords":"Biology; Physarum polycephalum; Eukaryote; Genetics; Genome; Most recent common ancestor; Evolutionary biology; Horizontal gene transfer; Histidine kinase; Gene; Cell biology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003899022,0.000142189,0.0002268682,0.00007931745,0.0001254587,0.00002295678,0.00008349498,0.00009154268,0.000004255985],"category_scores_gemma":[0.0001036277,0.000108175,0.0000301252,0.0001551358,0.0002109136,0.00009780959,0.00007781074,0.0001387679,0.00001046164],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006386664,"about_ca_system_score_gemma":0.00002848207,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001023571,"about_ca_topic_score_gemma":0.000006902254,"domain_scores_codex":[0.999045,0.0001107895,0.0002255062,0.0001981069,0.00008281199,0.0003378126],"domain_scores_gemma":[0.9993608,0.0001254306,0.00004511985,0.0001830098,0.0001558781,0.0001297605],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001464915,0.00001786319,0.02370373,0.0000456354,0.0001044826,0.000004834546,0.0002043119,0.001200057,0.9727465,0.001048873,0.00007362937,0.0007035761],"study_design_scores_gemma":[0.002721545,0.001393289,0.94772,0.0000784774,0.0002141473,0.0001487403,0.0004877757,0.01022641,0.01501502,0.008679709,0.0124868,0.0008280986],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.969389,0.02974537,0.0001660069,0.00009887676,0.0002279206,0.0002568934,0.00002182553,0.00004715586,0.00004699718],"genre_scores_gemma":[0.9986069,0.0007299944,0.000355431,0.00002524772,0.0001183603,0.00001117289,0.00003351878,0.00001558052,0.0001038379],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9577315,"threshold_uncertainty_score":0.4411249,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03658960306102423,"score_gpt":0.2622127568553192,"score_spread":0.225623153794295,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}