{"id":"W2174899723","doi":"10.1139/gen-2013-0182","title":"Sequencing and annotation of the chloroplast DNAs and identification of polymorphisms distinguishing normal male-fertile and male-sterile cytoplasms of onion","year":2013,"lang":"en","type":"article","venue":"Genome","topic":"Garlic and Onion Studies","field":"Agricultural and Biological Sciences","cited_by":54,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"U.S. Department of Agriculture","keywords":"Biology; Cytoplasmic male sterility; Indel; Chloroplast DNA; Genetics; Restriction fragment length polymorphism; Genome; Mitochondrial DNA; Gene; Restriction enzyme; Intergenic region; Non-Mendelian inheritance; Chloroplast; Nuclear gene; Single-nucleotide polymorphism; Polymerase chain reaction; Genotype","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000119914,0.0000585132,0.0001189415,0.000008574076,0.00010492,0.00001932343,0.00005226814,0.00003007302,0.00004852303],"category_scores_gemma":[0.00004599819,0.00002375277,0.00001786012,0.00007985121,0.0001414612,0.0001048611,0.00008903549,0.00002927291,7.102234e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000006242512,"about_ca_system_score_gemma":0.000003567753,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004592952,"about_ca_topic_score_gemma":0.00008206532,"domain_scores_codex":[0.9994723,0.00002369863,0.0002152832,0.0001140758,0.00009268148,0.00008194515],"domain_scores_gemma":[0.9996203,0.00005558247,0.0001941025,0.0000339229,0.00006881203,0.00002727718],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000006881161,0.000006505553,0.101401,0.00002673548,0.000005224934,9.21987e-8,0.0007033125,0.000002099123,0.8937182,0.00005091156,0.000005702639,0.004073299],"study_design_scores_gemma":[0.00006540531,0.00005832134,0.9828914,0.00002203674,0.000008689923,0.00001424684,0.001099623,0.00007387138,0.01558741,0.0000638557,0.00006981529,0.00004534968],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9990376,0.0003291756,0.000007661461,0.0002162478,0.00003887434,0.0001224074,0.00003436627,0.000003830697,0.0002098718],"genre_scores_gemma":[0.9995465,0.00005973267,0.00005624929,0.00001503252,0.00002651065,0.000004956875,0.000007031954,5.528869e-7,0.0002833861],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8814903,"threshold_uncertainty_score":0.09686098,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01525729356024637,"score_gpt":0.1881472163746793,"score_spread":0.172889922814433,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}