{"id":"W2176076884","doi":"10.1371/journal.pgen.1005608","title":"The RNAPII-CTD Maintains Genome Integrity through Inhibition of Retrotransposon Gene Expression and Transposition","year":2015,"lang":"en","type":"article","venue":"PLoS Genetics","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"Child and Family Research Institute; University of British Columbia","funders":"Université de Namur; Canadian Institutes of Health Research; University at Albany; Natural Sciences and Engineering Research Council of Canada; Canadian Institute for Advanced Research","keywords":"Retrotransposon; Biology; Gene; CTD; RNA polymerase II; Genetics; Transcription (linguistics); Gene expression; Long terminal repeat; Regulation of gene expression; Genome; Cell biology; Transposable element; Promoter","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001190035,0.0001040483,0.0001126287,0.000005355391,0.0002021347,0.00003069855,0.0001061981,0.0000978367,0.00002497888],"category_scores_gemma":[0.00001864457,0.00003937619,0.00004636633,0.0001434605,0.00009557971,0.00005121686,0.00002861222,0.0001092948,0.000003985427],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002134554,"about_ca_system_score_gemma":0.00001026082,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002268683,"about_ca_topic_score_gemma":0.0002104201,"domain_scores_codex":[0.999124,0.00008618736,0.0002206569,0.0001804865,0.0002254831,0.0001631864],"domain_scores_gemma":[0.9995795,0.0000704378,0.00007538236,0.0000693466,0.0001218481,0.00008342372],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003407017,0.00007743166,0.002179534,0.00000603969,0.000008584705,8.863999e-7,0.0006006184,0.00002321859,0.9956083,0.0003067813,0.00001101957,0.001143504],"study_design_scores_gemma":[0.0002968198,0.0005477934,0.03052672,0.00003434228,0.00004099372,0.000007242861,0.0004697482,0.0003586135,0.9552141,0.01069259,0.001663184,0.0001477982],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9967984,0.001043737,0.00009656269,0.001413285,0.00005241394,0.000222374,0.0001302816,0.0000232435,0.0002197273],"genre_scores_gemma":[0.9979072,0.0006049744,0.001126236,0.00006426969,0.0001597906,0.00001441706,0.0001008737,0.000001333766,0.00002091454],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04039416,"threshold_uncertainty_score":0.1605715,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04570387578068198,"score_gpt":0.228902617982621,"score_spread":0.183198742201939,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}