{"id":"W2176871308","doi":"10.1111/j.1550-7408.2004.tb00570.x","title":"Phylogenetic Position of Species in the Genera <i>Anoplophrya, Plagiotoma</i>, and <i>Nyctotheroides</i> (Phylum Ciliophora), Endosymbiotic Ciliates of Annelids and Anurans","year":2004,"lang":"en","type":"article","venue":"Journal of Eukaryotic Microbiology","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph; University of Ottawa","funders":"","keywords":"Biology; Ciliate; Phylogenetic tree; Phylum; Protozoa; Zoology; Protist; Phylogenetics; Ciliata; Evolutionary biology; Gene; Ecology; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003516326,0.0001551247,0.0003387229,0.00009849926,0.00004345757,0.000009236613,0.0002479344,0.000179526,0.000007481007],"category_scores_gemma":[0.00004599884,0.0001193519,0.00009583444,0.0001196597,0.0004280384,0.00000734666,0.00007298959,0.0001557869,4.586057e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001362846,"about_ca_system_score_gemma":0.00007777322,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003296073,"about_ca_topic_score_gemma":0.00005490368,"domain_scores_codex":[0.9989572,0.0001622246,0.0004491009,0.0001778556,0.00006645446,0.0001871843],"domain_scores_gemma":[0.9993013,0.00004858639,0.0003244559,0.0001667319,0.0001153997,0.00004354192],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002127606,0.0001263809,0.06884492,0.00006823754,0.00007583493,0.00002197559,0.0003936144,0.0001295652,0.9298519,0.00006982467,0.0001135302,0.00009143706],"study_design_scores_gemma":[0.002036273,0.001702597,0.2059133,0.00008453614,0.00007997367,0.001314353,0.0003827568,0.000001996949,0.7874898,0.0006999694,0.0001438504,0.0001506036],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9918211,0.007372423,0.0001254003,0.0002753563,0.00009848783,0.0001669929,0.00008505991,0.000001033654,0.00005410653],"genre_scores_gemma":[0.9971964,0.001655526,0.0006768634,0.0003464624,0.00008432171,8.418822e-7,0.00001833658,0.000008074109,0.00001311413],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1423621,"threshold_uncertainty_score":0.486703,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006147670430727321,"score_gpt":0.1918861269295672,"score_spread":0.1857384564988399,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}