{"id":"W2177615447","doi":"10.1105/tpc.15.00632","title":"Inference of Longevity-Related Genes from a Robust Coexpression Network of Seed Maturation Identifies Regulators Linking Seed Storability to Biotic Defense-Related Pathways","year":2015,"lang":"en","type":"article","venue":"The Plant Cell","topic":"Seed Germination and Physiology","field":"Agricultural and Biological Sciences","cited_by":185,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Agence Nationale de la Recherche","keywords":"Biology; Longevity; Medicago truncatula; Arabidopsis; Arabidopsis thaliana; Gene; Genetics; Transcription factor; Phenotype; Gene regulatory network; Mutant; Computational biology; Cell biology; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001786266,0.0002159597,0.0001711116,0.0007391724,0.0001500567,0.0002321824,0.0001341652,0.0001315944,0.0004024858],"category_scores_gemma":[0.000510932,0.0001192174,0.0002966656,0.0005049875,0.0001214681,0.0001887371,0.0002234826,0.0001625849,0.00009672815],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002560089,"about_ca_system_score_gemma":0.0002084702,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001138765,"about_ca_topic_score_gemma":0.002164233,"domain_scores_codex":[0.9998972,0.0000146058,0.000005867705,0.00005645277,0.00001471406,0.00001119546],"domain_scores_gemma":[0.9997018,0.0001181123,0.00009818524,0.00002413379,0.00002934586,0.00002837165],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000453772,0.0001176666,0.3047482,0.0002660823,0.000258715,0.0003553534,0.0001777649,0.02734366,0.63045,0.001125159,0.0003409451,0.03436269],"study_design_scores_gemma":[0.00001764394,0.0002418042,0.722094,0.00001770089,0.0001856804,0.0003973869,0.0001124606,0.2325547,0.04117101,0.00148593,0.001702028,0.00001970649],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9864361,0.0001385924,0.0117879,0.00001503652,0.000001599301,0.00001061078,0.001207578,0.00008856338,0.000313915],"genre_scores_gemma":[0.9902177,0.00008255134,0.006338616,0.000006724392,0.000002733105,0.00001756276,0.003135453,0.00001178442,0.0001868548],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001138765,"threshold_uncertainty_score":0.002264261,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04328873775826095,"score_gpt":0.2157976094958268,"score_spread":0.1725088717375658,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}