{"id":"W2177621378","doi":"10.1186/s12977-015-0223-z","title":"Lack of a significant impact of Gag-Protease-mediated HIV-1 replication capacity on clinical parameters in treatment-naive Japanese individuals","year":2015,"lang":"en","type":"article","venue":"Retrovirology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"AIDS Vancouver; Simon Fraser University","funders":"Japan Society for the Promotion of Science; Michael Smith Health Research BC","keywords":"Group-specific antigen; Allele; Protease; Immunology; Viral load; Antibody; Virology; Human leukocyte antigen; Viral replication; Population; Biology; Immune system; Medicine; Human immunodeficiency virus (HIV); Virus; Genetics; Antigen; Gene; Enzyme","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008560911,0.0002149147,0.0007578346,0.0002831307,0.00002478191,0.00000275667,0.0002012108,0.0004455385,0.0001075824],"category_scores_gemma":[0.001604549,0.0001538052,0.00023229,0.0002237475,0.0006767056,0.00004180319,0.00004371689,0.0003209693,0.0006566342],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002704961,"about_ca_system_score_gemma":0.0002919449,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002640542,"about_ca_topic_score_gemma":0.00004613623,"domain_scores_codex":[0.9968808,0.001400317,0.0007066343,0.0004873002,0.00007596761,0.0004489867],"domain_scores_gemma":[0.9977536,0.0009310063,0.000377098,0.0007252843,0.0001026334,0.0001104282],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.002773115,0.00221945,0.9463923,0.00001065255,0.0007698248,0.0000249271,0.001204096,0.00006775495,0.04381957,0.00004354436,0.001074118,0.001600642],"study_design_scores_gemma":[0.0134812,0.03362979,0.9216776,0.00002873146,0.0001112547,0.00003787558,0.0003657998,0.00002412594,0.02974217,0.0001891327,0.0004829761,0.0002293044],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976029,0.0002078357,0.000003744891,0.0002118867,0.00006871533,0.0007338807,0.0008175651,0.00002122157,0.0003322215],"genre_scores_gemma":[0.9988045,0.00008632023,0.00007892164,0.00003448916,0.00001101704,0.00009511417,0.0007274609,0.00001345072,0.0001487709],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03141034,"threshold_uncertainty_score":0.8439923,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1671598575786758,"score_gpt":0.3944307327055646,"score_spread":0.2272708751268887,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}