{"id":"W2177866950","doi":"10.1186/s12864-015-2190-0","title":"Genomics and transcriptomics of Xanthomonas campestris species challenge the concept of core type III effectome","year":2015,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":71,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics; Institut National de la Recherche Agronomique; Centre National de la Recherche Scientifique; Centre de Coopération Internationale en Recherche Agronomique pour le Développement; Université de Toulouse; Institut de Recherche pour le Développement; Agence Nationale de la Recherche; Laboratoire d'Excellence TULIP","keywords":"Biology; Xanthomonas campestris; Genomics; DNA microarray; Comparative genomics; Computational biology; Transcriptome; Genetics; Genome; Bacteria; Gene; Gene expression","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002083581,0.000397747,0.0003278352,0.0002482665,0.0002237837,0.0004656195,0.0001532846,0.0002891868,0.0008498803],"category_scores_gemma":[0.0001877709,0.0001337831,0.000437478,0.0003343018,0.0002157233,0.000500961,0.0004158213,0.0005175582,0.0002571194],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002370544,"about_ca_system_score_gemma":0.0002058713,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003344708,"about_ca_topic_score_gemma":0.0005814089,"domain_scores_codex":[0.999895,0.000008349443,0.000005689852,0.00005762242,0.00001674827,0.00001646344],"domain_scores_gemma":[0.9997706,0.00006670941,0.00006069051,0.00004148933,0.0000339225,0.0000266046],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00008153074,0.000009887736,0.002847688,0.0002123248,0.0000167972,0.00009920468,0.0001066329,0.0001578198,0.9905052,0.0001823248,0.00006621894,0.005714514],"study_design_scores_gemma":[0.000027955,0.0007453093,0.4866665,0.0002192179,0.0002661016,0.002769634,0.0009124748,0.005974266,0.4591553,0.00410494,0.03910907,0.00004924519],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9803477,0.003050525,0.01171341,0.0002393093,0.00003374251,0.00003051368,0.003028586,0.0001814672,0.001374674],"genre_scores_gemma":[0.958162,0.003334373,0.02425793,0.0003094504,0.0000767484,0.0001163977,0.01017549,0.0001455518,0.003422001],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008498803,"threshold_uncertainty_score":0.002843082,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07898239858109506,"score_gpt":0.2286491166545185,"score_spread":0.1496667180734234,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}