{"id":"W2179324586","doi":"10.1093/nar/gkv1227","title":"Enhanced annotations and features for comparing thousands of<i>Pseudomonas</i>genomes in the Pseudomonas genome database","year":2015,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1140,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University","funders":"Canadian Institutes of Health Research","keywords":"Genome; Biology; Annotation; Genome project; Metadata; Comparative genomics; Computational biology; Genomics; Database; Gene; Genetics; Computer science; World Wide Web","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002864173,0.001466352,0.001242917,0.007262575,0.001581543,0.001950814,0.002466193,0.001147167,0.01539247],"category_scores_gemma":[0.00733541,0.000633365,0.00129079,0.006529913,0.0003049687,0.002366727,0.002592236,0.001112002,0.006719192],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008872109,"about_ca_system_score_gemma":0.00179547,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007240955,"about_ca_topic_score_gemma":0.01418348,"domain_scores_codex":[0.9980994,0.0002623674,0.0004024869,0.0004050326,0.0006365149,0.0001941744],"domain_scores_gemma":[0.9957338,0.001107237,0.0006177296,0.00103198,0.001122204,0.0003870796],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.005687505,0.001231115,0.04722985,0.006205501,0.0007303549,0.004423521,0.002111958,0.005450306,0.3814439,0.008075106,0.2408462,0.2965648],"study_design_scores_gemma":[0.0007490041,0.0003959769,0.124346,0.0008919281,0.0006980314,0.003956328,0.001369946,0.02209324,0.1552873,0.011733,0.6777455,0.0007336556],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"dataset","genre_gemma":"software","genre_scores_codex":[0.1348131,0.002100918,0.1233218,0.00118783,0.0004617117,0.0006913299,0.5982432,0.1162092,0.02297078],"genre_scores_gemma":[0.09504179,0.0006807514,0.2556899,0.0005225137,0.00008986162,0.0004565938,0.6349809,0.008327733,0.0042099],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.01539247,"threshold_uncertainty_score":0.05149299,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06727502397475188,"score_gpt":0.3497283085355466,"score_spread":0.2824532845607947,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}