{"id":"W2179442873","doi":"10.1101/017749","title":"Cis-regulatory changes associated with a recent mating system shift and floral adaptation in Capsella","year":2015,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Plant Reproductive Biology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Uppsala Multidisciplinary Center for Advanced Computational Science; Stockholms Universitet; Vetenskapsrådet; Royal Swedish Academy of Sciences; Science for Life Laboratory; University of Toronto; Deutsche Forschungsgemeinschaft; Knut och Alice Wallenbergs Stiftelse; Magnus Bergvalls Stiftelse; McGill University","keywords":"Selfing; Mating system; Outcrossing; Adaptation (eye); Mating; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000152713,0.0002881558,0.0002118476,0.0005664261,0.0001802152,0.00019334,0.0002162727,0.0002232456,0.0005756598],"category_scores_gemma":[0.0002770273,0.0001897433,0.0003678932,0.000248817,0.0001825792,0.00009473666,0.0002423684,0.0003254914,0.0001677047],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002475969,"about_ca_system_score_gemma":0.0001330024,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002538405,"about_ca_topic_score_gemma":0.004690828,"domain_scores_codex":[0.9998605,0.00001070735,0.000009136687,0.00006770621,0.00002893552,0.00002289282],"domain_scores_gemma":[0.9996505,0.00006249558,0.0001436331,0.00003590031,0.0000508114,0.00005671985],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006326468,0.000007146549,0.01674849,0.0000298974,0.00001639594,0.00006951108,0.00007121421,0.0001441296,0.9808958,0.00002621954,0.00001238046,0.001915535],"study_design_scores_gemma":[0.000004882691,0.00009041775,0.9511799,0.000005838001,0.00004553793,0.0003296142,0.0001026738,0.001188176,0.04644433,0.00003747942,0.000555918,0.00001514298],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987953,0.0001897027,0.000577236,0.0000100095,0.000002375211,0.000003570065,0.0002048406,0.00003607075,0.0001809224],"genre_scores_gemma":[0.9979047,0.00007578419,0.0008137202,0.00002795127,0.000003523797,0.00001004823,0.0007658097,0.0000187105,0.0003797143],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002538405,"threshold_uncertainty_score":0.005047202,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01802550762642694,"score_gpt":0.2080805029688236,"score_spread":0.1900549953423966,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}