{"id":"W2180202274","doi":"10.1038/ismej.2015.148","title":"The initial state of the human gut microbiome determines its reshaping by antibiotics","year":2015,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":367,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institut National de Santé Publique du Québec; Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; McGill University; Fonds Québécois de la Recherche sur la Nature et les Technologies; Mitacs; Québec Consortium for Drug Discovery; Compute Canada; Université Laval","keywords":"Microbiome; Antibiotics; Biology; Metagenomics; Enterobacter cloacae; Antibiotic resistance; Microbiology; Dysbiosis; Genetics; Gene; Enterobacteriaceae; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003223627,0.0001888502,0.0004894158,0.0003029312,0.0002137391,0.0005614536,0.000127205,0.0004656356,0.0008832668],"category_scores_gemma":[0.001563838,0.0002366928,0.0002922938,0.0002401073,0.0003009785,0.0003022054,0.0003275078,0.0004381356,0.0002500041],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002154073,"about_ca_system_score_gemma":0.0001910391,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009331324,"about_ca_topic_score_gemma":0.001108461,"domain_scores_codex":[0.9994506,0.0001502637,0.00002737711,0.0001169271,0.0001271716,0.0001276981],"domain_scores_gemma":[0.9994825,0.0001036225,0.0001805093,0.00006011401,0.00008547452,0.00008775295],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.003616688,0.0001578613,0.1656564,0.0002214344,0.0001413167,0.0003893424,0.00047339,0.000330563,0.7782017,0.0002043692,0.0003829003,0.05022411],"study_design_scores_gemma":[0.00003505916,0.001389772,0.9271129,0.00007567624,0.00009897132,0.000731002,0.0006465683,0.000577773,0.066153,0.0003966449,0.002753865,0.00002864618],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969811,0.001875822,0.0003394037,0.000108863,0.00001142414,0.00001211628,0.0001367682,0.00001310074,0.0005214125],"genre_scores_gemma":[0.9982415,0.0008335704,0.0004067389,0.0001011565,0.00001306656,0.00001657376,0.0001158559,0.000005808727,0.0002656539],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009331324,"threshold_uncertainty_score":0.002954841,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03864666385635142,"score_gpt":0.3254168428144214,"score_spread":0.28677017895807,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}