{"id":"W2180930786","doi":"10.1371/journal.ppat.1005262","title":"RNA-seq Brings New Insights to the Intra-Macrophage Transcriptome of Salmonella Typhimurium","year":2015,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":264,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Regina","funders":"","keywords":"Biology; Salmonella enterica; Transcriptome; Salmonella; Microbiology; Gene; Pathogenicity island; Virulence; Pathogen; Gene expression; Genetics; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003047972,0.0002511614,0.0003083322,0.0003059623,0.0002380661,0.000464528,0.0001560838,0.0002361124,0.0008885467],"category_scores_gemma":[0.0003281216,0.0001884785,0.000342956,0.0002765927,0.0001816234,0.0002013673,0.0003171512,0.0004271603,0.0006307368],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001903759,"about_ca_system_score_gemma":0.0002677834,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00103914,"about_ca_topic_score_gemma":0.002704494,"domain_scores_codex":[0.9998388,0.00001859991,0.000008506087,0.00005917518,0.00004678331,0.0000280345],"domain_scores_gemma":[0.9997829,0.00007975243,0.00002383161,0.0000269076,0.00006086909,0.00002569675],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001502166,0.00001038696,0.003676396,0.0001756054,0.00002604604,0.00005968916,0.0001785024,0.0006512113,0.9880069,0.000204935,0.0005297583,0.006330339],"study_design_scores_gemma":[0.00004661033,0.0004727377,0.2922646,0.0002346486,0.0003088342,0.0008988374,0.001612488,0.02923273,0.6024996,0.002547939,0.0697696,0.0001113157],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9423413,0.002211229,0.03174529,0.0003523414,0.00009284006,0.00003967341,0.01803076,0.0007771001,0.004409682],"genre_scores_gemma":[0.9069628,0.001937963,0.05436397,0.0006624804,0.00006380829,0.0001078742,0.03042131,0.0007007337,0.004779166],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00103914,"threshold_uncertainty_score":0.002972543,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05493969116931872,"score_gpt":0.2342517292168369,"score_spread":0.1793120380475182,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}