{"id":"W2180930786","doi":"10.1371/journal.ppat.1005262","title":"RNA-seq Brings New Insights to the Intra-Macrophage Transcriptome of Salmonella Typhimurium","year":2015,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":264,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Regina","funders":"","keywords":"Biology; Salmonella enterica; Transcriptome; Salmonella; Microbiology; Gene; Pathogenicity island; Virulence; Pathogen; Gene expression; Genetics; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002889819,0.0001906309,0.0003385342,0.00001838217,0.00008179371,0.00002291872,0.0004977534,0.0001358583,0.0001517212],"category_scores_gemma":[0.0001929158,0.0000643582,0.0001387752,0.0004383416,0.00006838214,0.00005851062,0.00008035082,0.0001478755,0.0002515836],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002513637,"about_ca_system_score_gemma":0.00002511725,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004021444,"about_ca_topic_score_gemma":0.0002267061,"domain_scores_codex":[0.9984877,0.000189106,0.0003545601,0.0003456323,0.0002482206,0.0003748529],"domain_scores_gemma":[0.99906,0.000190744,0.0001022465,0.0001480651,0.0001106132,0.0003883489],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00006497587,0.00008661239,0.003930636,0.000004940549,0.00002808479,0.00001490306,0.00136185,0.00001987531,0.9782572,0.0001759414,0.006207966,0.009847012],"study_design_scores_gemma":[0.001150363,0.00278797,0.4007565,0.0001168082,0.0002612338,0.00008732447,0.002666065,0.0002697126,0.2478987,0.008535795,0.334082,0.001387483],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9921643,0.0006388393,0.0000255868,0.004496006,0.0002966634,0.0002728046,0.00005004075,0.00006333524,0.001992389],"genre_scores_gemma":[0.9968405,0.00004581874,0.0001515147,0.001500953,0.0007661718,0.00001196787,0.00002105397,0.0000026929,0.0006593184],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7303585,"threshold_uncertainty_score":0.3233682,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05493969116931872,"score_gpt":0.2342517292168369,"score_spread":0.1793120380475182,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}