{"id":"W2181142518","doi":"10.1093/gbe/evv230","title":"Repetitive DNA and Plant Domestication: Variation in Copy Number and Proximity to Genes of LTR-Retrotransposons among Wild and Cultivated Sunflower (<i>Helianthus annuus</i>) Genotypes","year":2015,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":46,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Retrotransposon; Biology; Helianthus annuus; Genetics; Genome; Long terminal repeat; Sunflower; Gene; Helianthus; Transposable element","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001836605,0.0001005641,0.0001545406,0.00001984137,0.0001076571,0.00001262851,0.00003647995,0.0001368768,0.0000128589],"category_scores_gemma":[0.00006013321,0.00005189882,0.00001061177,0.0001791927,0.0001644075,0.0000854502,0.00003981942,0.00005339329,0.000001970585],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002057611,"about_ca_system_score_gemma":0.00001246183,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007448265,"about_ca_topic_score_gemma":0.001103743,"domain_scores_codex":[0.9992679,0.00008357476,0.0001755722,0.0002820233,0.00004784304,0.000143089],"domain_scores_gemma":[0.9996592,0.00005790825,0.00006161076,0.00003581528,0.00007910342,0.0001063267],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00009018157,0.00003545775,0.7876743,0.000008365121,0.00001213054,6.816647e-7,0.001005003,0.000003348369,0.2088398,0.001186067,0.000004948524,0.001139722],"study_design_scores_gemma":[0.0002764964,0.0002870457,0.9957915,0.00001566932,0.00001774678,0.00001640268,0.0001297753,0.0001089535,0.0005820228,0.002175603,0.0004884262,0.0001103762],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977413,0.0009687333,0.0001039089,0.0005692849,0.00004971549,0.0002752415,0.0002253647,0.0000141613,0.00005227536],"genre_scores_gemma":[0.9990157,0.0003393258,0.0003836543,0.00003309922,0.00006411786,0.00002030877,0.0001181644,8.062417e-7,0.00002477749],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2082578,"threshold_uncertainty_score":0.2116372,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01226341391612827,"score_gpt":0.2215705480609389,"score_spread":0.2093071341448106,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}