{"id":"W2181142518","doi":"10.1093/gbe/evv230","title":"Repetitive DNA and Plant Domestication: Variation in Copy Number and Proximity to Genes of LTR-Retrotransposons among Wild and Cultivated Sunflower (<i>Helianthus annuus</i>) Genotypes","year":2015,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":46,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Retrotransposon; Biology; Helianthus annuus; Genetics; Genome; Long terminal repeat; Sunflower; Gene; Helianthus; Transposable element","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003278249,0.000274821,0.0003283607,0.001214332,0.0001681978,0.0002822985,0.0002496171,0.0003206643,0.0007445851],"category_scores_gemma":[0.0004556174,0.0001676262,0.0002738762,0.0006897407,0.0002862056,0.0001980044,0.0002539655,0.0002253136,0.0001318334],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002835047,"about_ca_system_score_gemma":0.0000912275,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001006175,"about_ca_topic_score_gemma":0.001320478,"domain_scores_codex":[0.9996911,0.00005007498,0.00003276033,0.000154505,0.00003873335,0.00003285608],"domain_scores_gemma":[0.9994411,0.0001798415,0.000219813,0.00004508151,0.00003922222,0.00007493752],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004848696,0.00004319985,0.0698786,0.00004316706,0.00008995493,0.0001142384,0.0003264678,0.0001683859,0.9249013,0.00005217957,0.00001734199,0.003880322],"study_design_scores_gemma":[0.000006440291,0.0001268615,0.9802238,0.000003235261,0.00003074159,0.0002879971,0.00006563479,0.0004000823,0.01865104,0.00002957531,0.0001666563,0.000007996197],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9994936,0.00008889764,0.0001491874,0.000004354057,8.15118e-7,0.000001949063,0.000174117,0.000005770009,0.00008133802],"genre_scores_gemma":[0.9989293,0.00004395034,0.0003539485,0.000007871893,0.000002117782,0.000006206944,0.0004639444,0.000009325791,0.0001832431],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001214332,"threshold_uncertainty_score":0.002490878,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01226341391612827,"score_gpt":0.2215705480609389,"score_spread":0.2093071341448106,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}