{"id":"W2183694796","doi":"10.21769/bioprotoc.1159","title":"Analysis of Mycobacterial Protein Secretion","year":2014,"lang":"en","type":"article","venue":"BIO-PROTOCOL","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; School of Medicine, New York University; York University","keywords":"Mycobacterium tuberculosis; Mycobacterium smegmatis; Microbiology; Virulence; GroEL; Mycobacterium bovis; Secretion; Biology; Secretory protein; Mycobacterium; Mycobacterium abscessus; Bacteria; Gene; Biochemistry; Tuberculosis; Genetics; Escherichia coli","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003996055,0.0007815742,0.0006055228,0.001184324,0.0003561626,0.0004950211,0.0003409921,0.0005948319,0.001306097],"category_scores_gemma":[0.0003943479,0.0002035546,0.0005336343,0.001365712,0.000220073,0.0003454494,0.000461986,0.001031013,0.001184043],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002113253,"about_ca_system_score_gemma":0.000157943,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003140335,"about_ca_topic_score_gemma":0.0004118189,"domain_scores_codex":[0.9994045,0.000072266,0.00007819259,0.0001239842,0.0002572411,0.00006388495],"domain_scores_gemma":[0.9996301,0.00007192542,0.00007798434,0.00005518391,0.0001143523,0.00005050374],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00002673588,0.0000187312,0.0003104717,0.00006931276,0.000007076213,0.0000358623,0.00001917273,0.00001384335,0.9981657,0.00002560486,0.00004901852,0.001258613],"study_design_scores_gemma":[0.000005092947,0.0002720365,0.01342512,0.00002748924,0.00004002999,0.0004592568,0.00005471269,0.0008033901,0.9790087,0.00007364293,0.005819128,0.00001127698],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.8583665,0.0133551,0.1028296,0.0004573991,0.0004333125,0.0005261961,0.01536229,0.00116909,0.007500401],"genre_scores_gemma":[0.7954298,0.01665454,0.1267634,0.0005087476,0.000162031,0.0008156405,0.03686437,0.0004523879,0.02234897],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.001306097,"threshold_uncertainty_score":0.004369318,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03056090436717324,"score_gpt":0.3716907335969524,"score_spread":0.3411298292297792,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}