{"id":"W2183694796","doi":"10.21769/bioprotoc.1159","title":"Analysis of Mycobacterial Protein Secretion","year":2014,"lang":"en","type":"article","venue":"BIO-PROTOCOL","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; School of Medicine, New York University; York University","keywords":"Mycobacterium tuberculosis; Mycobacterium smegmatis; Microbiology; Virulence; GroEL; Mycobacterium bovis; Secretion; Biology; Secretory protein; Mycobacterium; Mycobacterium abscessus; Bacteria; Gene; Biochemistry; Tuberculosis; Genetics; Escherichia coli","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0007782781,0.0001048386,0.0004709646,0.0002947846,0.00003205269,0.000006877684,0.00009072961,0.0001370164,0.001247557],"category_scores_gemma":[0.0008289287,0.00007647133,0.0002069228,0.0004992037,0.00009122383,0.00003609731,0.00004296894,0.0001158786,0.00006453079],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003833707,"about_ca_system_score_gemma":0.00005638201,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001832406,"about_ca_topic_score_gemma":0.00002973661,"domain_scores_codex":[0.998643,0.0002637812,0.0003712232,0.0002358557,0.0002266225,0.0002594587],"domain_scores_gemma":[0.999143,0.00006338362,0.000127938,0.0003810262,0.0001245432,0.0001601103],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.005164423,0.0004736837,0.1896084,0.0007593132,0.001356556,0.000009030925,0.0000637838,0.00001215131,0.7724357,0.001904285,0.005138183,0.02307443],"study_design_scores_gemma":[0.005175005,0.002404077,0.5761245,0.0001124536,0.000427747,0.000006227975,0.00001429658,0.006774721,0.04400525,0.0002253159,0.3645169,0.0002135546],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"protocol","genre_gemma":"protocol","genre_scores_codex":[0.2178226,5.0275e-7,0.0008666333,0.001026574,0.00002813452,0.7745653,0.00001434703,0.00006008796,0.005615772],"genre_scores_gemma":[0.2042786,1.148097e-7,0.0005315649,0.0001696019,0.0002510757,0.7944623,0.00004447099,0.000009379438,0.0002528938],"genre_candidate":"protocol","genre_consensus":"protocol","teacher_disagreement_score":0.7284304,"threshold_uncertainty_score":0.9996654,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03056090436717324,"score_gpt":0.3716907335969524,"score_spread":0.3411298292297792,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}