{"id":"W2184109305","doi":"10.1038/ncomms2596","title":"Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying Oryza genome evolution","year":2013,"lang":"en","type":"article","venue":"Nature Communications","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":215,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics and Developmental Biology, Chinese Academy of Sciences; Chinese Academy of Sciences; Institute of Genetics; Agriculture and Agri-Food Canada; National Natural Science Foundation of China","keywords":"Genome; Biology; Oryza; Retrotransposon; Genome evolution; Genetics; Oryza sativa; Gene; Whole genome sequencing; Transposable element","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002038596,0.0003218269,0.0001957553,0.000299483,0.0001970854,0.0003220374,0.000203014,0.0002545296,0.0006289818],"category_scores_gemma":[0.0003436635,0.0001746737,0.000324684,0.0004444191,0.0001373027,0.000327377,0.0002919189,0.0005193638,0.0004227506],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002712275,"about_ca_system_score_gemma":0.0003353575,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00148652,"about_ca_topic_score_gemma":0.002074314,"domain_scores_codex":[0.9999064,0.000006157697,0.000005245763,0.00005136876,0.00001908529,0.0000116879],"domain_scores_gemma":[0.9998092,0.00003534745,0.00005677367,0.00003611508,0.00003279888,0.00002990513],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001401862,0.00001183727,0.004341782,0.0001052634,0.00002769861,0.00009080179,0.0001119824,0.0006336496,0.9830074,0.0003495075,0.0002077572,0.01097218],"study_design_scores_gemma":[0.00005121478,0.0003201581,0.4867577,0.00007012171,0.0002579608,0.0007779287,0.0003123023,0.01131757,0.4359808,0.003028117,0.06106955,0.00005663637],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9666798,0.003235708,0.01887547,0.0003467036,0.00006527434,0.0000312158,0.008658842,0.000528226,0.001578872],"genre_scores_gemma":[0.9389795,0.003259342,0.02853027,0.0002277486,0.00004416809,0.00004468405,0.0246578,0.0002484864,0.004007977],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00148652,"threshold_uncertainty_score":0.002955794,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04642121056978315,"score_gpt":0.2660530948110986,"score_spread":0.2196318842413155,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}