{"id":"W2186911163","doi":"10.1093/ecco-jcc/jjv204","title":"Characterization of Intestinal Microbiota in Ulcerative Colitis Patients with and without Primary Sclerosing Cholangitis","year":2015,"lang":"en","type":"article","venue":"Journal of Crohn s and Colitis","topic":"Liver Diseases and Immunity","field":"Medicine","cited_by":91,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary; University of Toronto; Mount Sinai Hospital","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; Canadian Association of Gastroenterology; Canadian Institutes of Health Research; PSC Partners Seeking a Cure; Crohn's and Colitis Canada; American Association for the Study of Liver Diseases","keywords":"Ulcerative colitis; Primary sclerosing cholangitis; Internal medicine; Gut flora; Microbiome; Confounding; Cohort; Medicine; Metagenomics; Inflammatory bowel disease; Gastroenterology; Biology; Disease; Immunology; Bioinformatics; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002286547,0.0002487257,0.0003778145,0.001105231,0.0004001186,0.0005085146,0.0001118373,0.0003113072,0.00127369],"category_scores_gemma":[0.001044229,0.0001384363,0.0002368689,0.0007601489,0.0002966464,0.0002325544,0.0004579472,0.0001906155,0.0001814651],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002148855,"about_ca_system_score_gemma":0.0002156322,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002072597,"about_ca_topic_score_gemma":0.00280173,"domain_scores_codex":[0.9997026,0.00005651428,0.0000517232,0.00007563182,0.00005105932,0.00006249896],"domain_scores_gemma":[0.9995746,0.00006958874,0.0001704933,0.00002373527,0.0000588041,0.000102786],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004286615,0.00002516579,0.9928653,0.00002846492,0.00003041815,0.0002277241,0.0001617967,0.00002351493,0.003913461,0.000007377337,0.00004592444,0.002242128],"study_design_scores_gemma":[0.000005815621,0.0001496186,0.9987127,0.000006041318,0.00001620009,0.0005978817,0.0001934748,0.00005292253,0.0001769236,0.000007149026,0.00008006419,0.000001311798],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9995583,0.0001576768,0.0000335265,0.000009314466,0.000001652974,0.000005252596,0.0001008657,0.000001227056,0.0001320872],"genre_scores_gemma":[0.9993497,0.00009413857,0.0001248452,0.00001641847,0.000004818141,0.0000074493,0.0003394865,0.000001184677,0.00006210105],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002072597,"threshold_uncertainty_score":0.004260898,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01550912558067884,"score_gpt":0.2366726906602506,"score_spread":0.2211635650795718,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}