{"id":"W2187083977","doi":"10.1371/journal.pone.0143615","title":"DNA Data Visualization (DDV): Software for Generating Web-Based Interfaces Supporting Navigation and Analysis of DNA Sequence Data of Entire Genomes","year":2015,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke; Concordia University","funders":"Concordia University; Fonds de Recherche du Québec - Santé; Cystic Fibrosis Canada","keywords":"Visualization; Software visualization; Computer science; Software; Zoom; Genome browser; Data visualization; Interface (matter); User interface; Genome; Genomics; Computational biology; Data mining; Biology; Software development; Genetics; Component-based software engineering; Programming language","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003104101,0.002422877,0.001560973,0.004538143,0.0008418718,0.00220897,0.003055576,0.001695548,0.05114396],"category_scores_gemma":[0.005733863,0.001937684,0.001503128,0.002989581,0.0005060341,0.002478435,0.002956107,0.002544752,0.02555352],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007072059,"about_ca_system_score_gemma":0.001316142,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001749274,"about_ca_topic_score_gemma":0.001529121,"domain_scores_codex":[0.9986675,0.0002645606,0.0001780731,0.0002396003,0.0005446617,0.0001055583],"domain_scores_gemma":[0.997945,0.000939467,0.0002050921,0.0003047206,0.0004444598,0.000161219],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0008029883,0.000277601,0.003456816,0.003596285,0.0003758025,0.0007621116,0.001131838,0.004354811,0.06661836,0.01225164,0.4740834,0.4322884],"study_design_scores_gemma":[0.0006161736,0.000256138,0.00666288,0.0007484825,0.0001760453,0.001778903,0.0001889847,0.04804818,0.10259,0.02408982,0.8143805,0.0004638963],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"methods","genre_gemma":"software","genre_scores_codex":[0.003218759,0.0007239021,0.526327,0.0003062404,0.0002321464,0.0006319282,0.0343469,0.4273197,0.006893429],"genre_scores_gemma":[0.02178391,0.001397074,0.8069485,0.0005873271,0.0001177803,0.003093852,0.07630248,0.07500857,0.01476044],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.05114396,"threshold_uncertainty_score":0.1710936,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1391770257575843,"score_gpt":0.3340996874478496,"score_spread":0.1949226616902652,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}