{"id":"W2190074293","doi":"10.3390/info6040811","title":"Information and Phylogenetic Systematic Analysis","year":2015,"lang":"en","type":"article","venue":"Information","topic":"Evolution and Paleontology Studies","field":"Earth and Planetary Sciences","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Shared Hierarchical Academic Research Computing Network; McMaster University; Fields Institute for Research in Mathematical Sciences","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; McMaster University","keywords":"Cladogram; Character (mathematics); Synapomorphy; Phylogenetic tree; Measure (data warehouse); Autapomorphy; Taxon; Matrix (chemical analysis); Computer science; Mathematics; Cladistics; Biology; Data mining; Paleontology; Genetics; Geometry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002569363,0.00005307781,0.0001198587,0.0001941891,0.00006440305,0.0000581795,0.00004164452,0.0000348977,0.0000453356],"category_scores_gemma":[0.0000999244,0.00004091763,0.00002154849,0.000221963,0.00002990635,0.001290335,0.000003999634,0.00002921744,0.0006551623],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000003922725,"about_ca_system_score_gemma":0.00001859014,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001664195,"about_ca_topic_score_gemma":0.002027137,"domain_scores_codex":[0.999485,0.00002677846,0.0002500342,0.00002295639,0.0001362621,0.00007895982],"domain_scores_gemma":[0.999628,0.00003836165,0.0001177521,0.00006746593,0.00008473829,0.00006367079],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00001393031,0.000001355064,0.9800397,0.0005743073,0.0001624857,1.513153e-7,0.007217717,0.004924992,6.891349e-8,0.0005405022,0.0008638258,0.005661007],"study_design_scores_gemma":[0.0002200586,0.00004239886,0.9396375,0.00002693363,0.0001684086,0.000008352677,0.00253509,0.05485917,8.822818e-7,0.0004065321,0.002006116,0.00008856821],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.5674434,0.002277537,0.01337615,0.0004629084,0.0004372691,0.0006825957,0.00005883348,0.0001653223,0.415096],"genre_scores_gemma":[0.9992626,0.00001761958,0.000215285,0.0002906412,0.000007324678,0.000001557588,0.0001130063,1.864446e-7,0.00009173938],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4318193,"threshold_uncertainty_score":0.8421004,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01628463481974801,"score_gpt":0.2081356074117313,"score_spread":0.1918509725919832,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}