{"id":"W2190891477","doi":"10.1038/srep18234","title":"Comparative genomics Lactobacillus reuteri from sourdough reveals adaptation of an intestinal symbiont to food fermentations","year":2015,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":63,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"China Scholarship Council; Alberta Livestock and Meat Agency; Canada Research Chairs","keywords":"Lactobacillus reuteri; Biology; Comparative genomics; Adaptation (eye); Genome; Phylogenetic tree; Host adaptation; Gene; Phylogenetics; Genetics; Genomics; Evolutionary biology; Bacteria; Probiotic","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005760646,0.0001079853,0.0001853809,0.00002645113,0.0001708784,0.0001587832,0.0001607228,0.00004582518,0.00004713401],"category_scores_gemma":[0.00006868251,0.00005165784,0.00004904941,0.0003814771,0.00009425069,0.0001760337,0.00008058128,0.00005741924,0.00001549158],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006709796,"about_ca_system_score_gemma":0.00004638341,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003096827,"about_ca_topic_score_gemma":0.001116135,"domain_scores_codex":[0.9985739,0.00006440282,0.0004291466,0.0004490261,0.0003007226,0.0001827976],"domain_scores_gemma":[0.9989907,0.00003152305,0.000275125,0.0001616728,0.000307352,0.0002336966],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000464578,0.0002446656,0.001933698,0.000002577328,0.0000230642,0.00001768181,0.004003581,0.0005351307,0.9867671,0.0001196991,0.001417086,0.004889285],"study_design_scores_gemma":[0.001060675,0.008330503,0.2396281,0.0003094705,0.0001862159,0.0002901472,0.05054593,0.005641615,0.5285702,0.1001903,0.06346133,0.001785527],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975989,0.00003433997,0.000167994,0.0002189513,0.001158812,0.0003231902,0.00008575289,0.00003139828,0.0003806973],"genre_scores_gemma":[0.9955488,5.255247e-7,0.003580521,0.00003939636,0.00007394507,0.00001106188,0.0005448346,8.893475e-7,0.0001999736],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4581968,"threshold_uncertainty_score":0.2106546,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1071454141441801,"score_gpt":0.280407563523415,"score_spread":0.1732621493792349,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}