{"id":"W2190891477","doi":"10.1038/srep18234","title":"Comparative genomics Lactobacillus reuteri from sourdough reveals adaptation of an intestinal symbiont to food fermentations","year":2015,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":63,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"China Scholarship Council; Alberta Livestock and Meat Agency; Canada Research Chairs","keywords":"Lactobacillus reuteri; Biology; Comparative genomics; Adaptation (eye); Genome; Phylogenetic tree; Host adaptation; Gene; Phylogenetics; Genetics; Genomics; Evolutionary biology; Bacteria; Probiotic","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001061825,0.0002819843,0.0003428237,0.0005560523,0.0002006637,0.0004942832,0.0001537537,0.0002103639,0.0005164423],"category_scores_gemma":[0.0001868657,0.0001062088,0.0002994918,0.0006763161,0.0001446814,0.0001657127,0.0003617333,0.0002674244,0.0001675292],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001626007,"about_ca_system_score_gemma":0.0001635906,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001051703,"about_ca_topic_score_gemma":0.001016293,"domain_scores_codex":[0.9998953,0.00001381153,0.00001152592,0.00002357756,0.00002476517,0.00003096287],"domain_scores_gemma":[0.9999113,0.00001639039,0.00002241117,0.000009277607,0.00002095594,0.00001966031],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002394551,0.00002464482,0.004893092,0.0000433994,0.00001457346,0.0001193641,0.0001189816,0.00006087286,0.9916713,0.00003369997,0.00002331501,0.002757231],"study_design_scores_gemma":[0.00003248454,0.0009839674,0.6582014,0.00005342286,0.0002083556,0.002096164,0.001681821,0.001794572,0.3304167,0.0002252976,0.004266192,0.00003963471],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980785,0.0003188044,0.0003884955,0.0000325049,0.000004276808,0.00001057015,0.0004922698,0.000007745155,0.0006667115],"genre_scores_gemma":[0.9956576,0.0003382774,0.001381725,0.00003801747,0.000006585536,0.00002053773,0.001958815,0.00001066226,0.0005878885],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001051703,"threshold_uncertainty_score":0.002091229,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1071454141441801,"score_gpt":0.280407563523415,"score_spread":0.1732621493792349,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}