{"id":"W2191563170","doi":"10.1093/gbe/evv244","title":"Organellar Genomes of White Spruce (<i>Picea glauca</i>): Assembly and Annotation","year":2015,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":55,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University; University of British Columbia; Université Laval; Canada's Michael Smith Genome Sciences Centre","funders":"Ministry of Forests, Lands and Natural Resource Operations; Genome Canada","keywords":"Biology; Genome; Plastid; Gene; Mitochondrial DNA; Genetics; Sequence assembly; Nuclear gene; Shotgun sequencing; Genome project; Ribosomal RNA; Computational biology; Transcriptome; Gene expression; Chloroplast","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002748629,0.0005462963,0.0003464568,0.0008459847,0.0005992614,0.0006810449,0.0004490913,0.0002720023,0.0006229634],"category_scores_gemma":[0.0003738632,0.00024949,0.0005046666,0.001174964,0.0001685653,0.0002704946,0.0003825958,0.0004566301,0.0005933979],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005235059,"about_ca_system_score_gemma":0.000757381,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00923676,"about_ca_topic_score_gemma":0.0146896,"domain_scores_codex":[0.9997928,0.00001578017,0.00001400701,0.0001037446,0.00004515021,0.00002847664],"domain_scores_gemma":[0.9997591,0.00002512295,0.00005071646,0.0000377729,0.00007517485,0.00005194661],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003266104,0.00004251644,0.006364767,0.0002944866,0.00004454291,0.0001825338,0.0004374534,0.001152457,0.973783,0.0002840191,0.0006746397,0.01641293],"study_design_scores_gemma":[0.00007454734,0.0004213938,0.5162401,0.0001308967,0.0003342395,0.001652921,0.0007678537,0.01701276,0.405444,0.001017361,0.05677332,0.0001307404],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8896483,0.00145271,0.03425973,0.0001192174,0.00003576125,0.0001465691,0.07027257,0.001350345,0.002714748],"genre_scores_gemma":[0.6075028,0.001520501,0.124464,0.0001684004,0.00002200105,0.0002427419,0.2604667,0.0007814207,0.004831349],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00923676,"threshold_uncertainty_score":0.01836598,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0111024707044252,"score_gpt":0.2305421718935174,"score_spread":0.2194397011890922,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}