{"id":"W2191563170","doi":"10.1093/gbe/evv244","title":"Organellar Genomes of White Spruce (<i>Picea glauca</i>): Assembly and Annotation","year":2015,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":55,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University; University of British Columbia; Université Laval; Canada's Michael Smith Genome Sciences Centre","funders":"Ministry of Forests, Lands and Natural Resource Operations; Genome Canada","keywords":"Biology; Genome; Plastid; Gene; Mitochondrial DNA; Genetics; Sequence assembly; Nuclear gene; Shotgun sequencing; Genome project; Ribosomal RNA; Computational biology; Transcriptome; Gene expression; Chloroplast","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002095204,0.0001161204,0.0001515094,0.00003459669,0.0001034351,0.000004830293,0.00005960061,0.000151088,0.000001571327],"category_scores_gemma":[0.00003478429,0.0001088328,0.00002314465,0.00005753314,0.0001587822,0.000001517267,0.0001459441,0.00003786565,0.000002127035],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001152882,"about_ca_system_score_gemma":0.00004867317,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003104562,"about_ca_topic_score_gemma":0.00003104035,"domain_scores_codex":[0.9993214,0.00005575518,0.0001671891,0.0002579326,0.00003632525,0.0001613953],"domain_scores_gemma":[0.9995819,0.000007964449,0.00008724874,0.0001349066,0.0001161886,0.00007178962],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00005995429,0.00001367753,0.2365188,0.00001315668,0.00004715747,2.419843e-7,0.0002699087,0.0000264185,0.7620476,0.0003831779,0.00005041362,0.0005694393],"study_design_scores_gemma":[0.0009489994,0.0009637993,0.9689698,0.00000468529,0.00005696453,0.00003728892,0.000513458,0.00006496103,0.00829082,0.002647293,0.01721884,0.0002831145],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9776914,0.02073108,0.0009435267,0.0001036329,0.000124684,0.0001077226,0.00003347237,0.000003212069,0.0002613127],"genre_scores_gemma":[0.9972854,0.001427872,0.0008790339,0.00005691985,0.0001477324,0.000005762083,0.00006651704,0.000008431845,0.0001223422],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7537569,"threshold_uncertainty_score":0.4438071,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0111024707044252,"score_gpt":0.2305421718935174,"score_spread":0.2194397011890922,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}