{"id":"W2193603013","doi":"10.18632/oncotarget.5291","title":"A common promoter hypomethylation signature in invasive breast, liver and prostate cancer cell lines reveals novel targets involved in cancer invasiveness","year":2015,"lang":"en","type":"article","venue":"Oncotarget","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Institute for Advanced Research; McGill University","funders":"Canadian Institutes of Health Research","keywords":"DNA methylation; Cancer; Biology; Cancer research; Prostate cancer; Cancer cell; Metastasis; Transcriptome; Methylation; Breast cancer; Gene signature; Gene; Gene expression; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004085043,0.0002275357,0.0002729518,0.0000941639,0.00003251219,0.0000302911,0.0001211735,0.0002810638,0.00001329649],"category_scores_gemma":[0.00007508305,0.0002154669,0.00003649282,0.0002038136,0.00005176431,0.00002675514,0.0001220207,0.000171105,0.000001399027],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001158806,"about_ca_system_score_gemma":0.0002844935,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003990287,"about_ca_topic_score_gemma":0.03103767,"domain_scores_codex":[0.9986231,0.000129357,0.0003291505,0.0004552652,0.0001702722,0.0002928302],"domain_scores_gemma":[0.9992573,0.00003037734,0.0001692319,0.00020134,0.0002092337,0.0001324854],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001388087,0.0001366286,0.4060783,0.00007522424,0.00001080717,0.000006468253,0.00066084,0.001080574,0.5908371,0.000003461879,0.0001469156,0.0008248474],"study_design_scores_gemma":[0.003655597,0.0003554236,0.4000884,0.0002455927,0.00002652714,0.00000298948,0.0002315239,0.0007087353,0.5896778,0.0007767818,0.003606397,0.0006242808],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9673166,0.03129325,0.00005879483,0.0003328471,0.0001502312,0.0005794932,0.0001310594,0.000007095581,0.0001305772],"genre_scores_gemma":[0.9926767,0.005351011,0.0008423895,0.0002120754,0.0001876441,0.0001707521,0.0002589849,0.00003422496,0.0002661689],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02704738,"threshold_uncertainty_score":0.9866434,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0245225119642743,"score_gpt":0.2804309387227648,"score_spread":0.2559084267584905,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}