{"id":"W2195930427","doi":"10.1016/j.gde.2015.10.008","title":"Genomics and the making of yeast biodiversity","year":2015,"lang":"en","type":"review","venue":"Current Opinion in Genetics & Development","topic":"Fermentation and Sensory Analysis","field":"Agricultural and Biological Sciences","cited_by":127,"is_retracted":false,"has_abstract":false,"ca_institutions":"Western University","funders":"Fondo para la Investigación Científica y Tecnológica; Pew Charitable Trusts; National Institutes of Health; National Institute of Food and Agriculture; Biological and Environmental Research; Conselho Nacional de Desenvolvimento Científico e Tecnológico; National Institute of Allergy and Infectious Diseases; Alexander von Humboldt-Stiftung; National Science Foundation; March of Dimes Foundation; Office of Science; Natural Sciences and Engineering Research Council of Canada; U.S. Department of Agriculture; Great Lakes Bioenergy Research Center; Consejo Nacional de Investigaciones Científicas y Técnicas; U.S. Department of Energy","keywords":"Biology; Genome; Genomics; Biodiversity; Evolutionary biology; Comparative genomics; Genetics; Yeast; Computational biology; Gene; Ecology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003657169,0.0001528687,0.0004906396,0.00003222416,0.00007329969,0.0000257947,0.0002097391,0.0000701435,0.00003092545],"category_scores_gemma":[0.00001098156,0.00005346229,0.00009804711,0.0002447243,0.00008945839,0.00001184649,0.0001762091,0.000108802,0.00001714129],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000681887,"about_ca_system_score_gemma":0.00006016907,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000003107973,"about_ca_topic_score_gemma":0.00001527612,"domain_scores_codex":[0.9989205,0.0001555089,0.0004256707,0.000205166,0.0001763686,0.0001168138],"domain_scores_gemma":[0.9995871,0.00004348693,0.0002435401,0.00004705393,0.00004967858,0.00002918412],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000004777157,0.00002275926,0.0001535297,0.0005593334,0.00002469954,6.605392e-8,0.0004119808,0.000001608155,6.26652e-7,0.00002211247,0.0004347902,0.9983637],"study_design_scores_gemma":[0.0001324782,0.000007599293,0.0008915972,0.0007841692,0.00004524287,0.000001323443,0.0001411295,0.000009624788,8.091075e-7,0.00002211432,0.997838,0.0001258739],"study_design_candidate":"design_other","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.001081442,0.9979379,0.000002060428,0.00005656541,0.000533336,0.000313748,0.00003991684,0.000004698259,0.00003032027],"genre_scores_gemma":[0.0001044022,0.9994637,0.0001289562,0.000009701422,0.00005660666,0.00001213647,0.0002129915,5.420704e-7,0.00001092195],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9982378,"threshold_uncertainty_score":0.2180129,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1870287774774727,"score_gpt":0.3491872865367301,"score_spread":0.1621585090592574,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}