{"id":"W2198841083","doi":"10.1186/s12864-015-2332-4","title":"Transcriptome profiling of a Rhizobium leguminosarum bv. trifolii rosR mutant reveals the role of the transcriptional regulator RosR in motility, synthesis of cell-surface components, and other cellular processes","year":2015,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":26,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Narodowe Centrum Nauki; University of Regina; University of Calgary","keywords":"Biology; Transcriptome; Rhizobium leguminosarum; Mutant; Regulator; Motility; DNA microarray; Cell biology; Gene expression profiling; Rhizobiaceae; Genetics; Computational biology; Gene expression; Symbiosis; Gene; Bacteria","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001035956,0.0005324736,0.0005124694,0.0003421725,0.0002447503,0.000239481,0.0001686943,0.0003275,0.0006688104],"category_scores_gemma":[0.00008799628,0.0001503349,0.0004552276,0.0003609004,0.0001461576,0.0001539333,0.0001822708,0.0005163309,0.0003522532],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002440706,"about_ca_system_score_gemma":0.0001753622,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001037603,"about_ca_topic_score_gemma":0.001234158,"domain_scores_codex":[0.9998342,0.000009346744,0.000008468508,0.000064262,0.00004824656,0.00003542129],"domain_scores_gemma":[0.9998744,0.00001943394,0.00004225223,0.000007985826,0.00002478211,0.00003122006],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004565674,0.000006535135,0.0002705621,0.00001944863,0.000003201259,0.00001968162,0.00001062388,0.00002102062,0.9993029,0.000006021022,0.00001929068,0.0002751658],"study_design_scores_gemma":[0.0000307775,0.0005802135,0.2038456,0.00003944146,0.0001339844,0.0007192458,0.0002937038,0.005735829,0.7843035,0.0001152481,0.004152595,0.00004990477],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9889542,0.0006421878,0.002451904,0.00007705273,0.00002274787,0.00002483387,0.00705107,0.0001411885,0.0006348105],"genre_scores_gemma":[0.9772418,0.0005035307,0.00477732,0.000129375,0.00001428461,0.00009866472,0.01464475,0.0001150631,0.002475296],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001037603,"threshold_uncertainty_score":0.002237439,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02724633260638746,"score_gpt":0.2018269580442488,"score_spread":0.1745806254378613,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}