{"id":"W2199172873","doi":"10.1128/jcm.02229-15","title":"Implementation of Next-Generation Sequencing for Hepatitis B Virus Resistance Testing and Genotyping in a Clinical Microbiology Laboratory","year":2015,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Hepatitis B Virus Studies","field":"Medicine","cited_by":36,"is_retracted":false,"has_abstract":true,"ca_institutions":"Mount Sinai Hospital; AIDS Vancouver; University of Toronto; University Health Network; University of British Columbia; Providence Health Care","funders":"","keywords":"Sanger sequencing; Genotyping; Biology; DNA sequencing; Hepatitis B virus; Clinical microbiology; Virology; Concordance; Massive parallel sequencing; Genotype; Genetics; Computational biology; Gene; Virus; Microbiology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.01358276,0.0007541925,0.00083929,0.001434254,0.0005575797,0.002110363,0.001068427,0.001052214,0.001493005],"category_scores_gemma":[0.009850345,0.0006577302,0.0008121735,0.0004957098,0.0008288323,0.001061434,0.001565556,0.001243738,0.001633692],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000708528,"about_ca_system_score_gemma":0.002434592,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008749606,"about_ca_topic_score_gemma":0.001052657,"domain_scores_codex":[0.9801025,0.01040647,0.001616006,0.002031265,0.005185203,0.0006585347],"domain_scores_gemma":[0.9927865,0.002598072,0.0007546186,0.001571884,0.00186748,0.0004215844],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001042294,0.001331959,0.04172184,0.0005031746,0.0001775383,0.001199738,0.0008318183,0.003459393,0.6859035,0.002336753,0.002106706,0.2593853],"study_design_scores_gemma":[0.0005592628,0.0105696,0.06033729,0.0008704427,0.0004297609,0.00596141,0.000972588,0.08748815,0.7786536,0.004974543,0.0488253,0.0003579856],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.2226022,0.001432987,0.759848,0.002186669,0.0003680972,0.003024162,0.0005505354,0.003759567,0.006227791],"genre_scores_gemma":[0.2469363,0.0004637852,0.7490863,0.0007804934,0.00009839005,0.0008796799,0.0006304028,0.000153865,0.0009708378],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.01358276,"threshold_uncertainty_score":0.07183331,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.2715574669115313,"score_gpt":0.445555149825313,"score_spread":0.1739976829137818,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}