{"id":"W2199498800","doi":"10.1038/ismej.2015.189","title":"The biogeography of the atlantic salmon (<i>Salmo salar</i>) gut microbiome","year":2015,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":405,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ministère des Ressources naturelles et des Forêts (Québec); Université Laval","funders":"National Marine Fisheries Service; Natural Sciences and Engineering Research Council of Canada; National Oceanic and Atmospheric Administration; Inland Fisheries Ireland; University College Cork","keywords":"Biology; Salmo; Microbiome; Vertebrate; Ecology; Phylotype; Zoology; Microbial ecology; Fishery; Phylogenetics; Fish <Actinopterygii>; Bacteria; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014256,0.0001420042,0.000177443,0.0001045151,0.001103342,0.00008992716,0.0007959857,0.00011795,0.0001902001],"category_scores_gemma":[0.0001213417,0.00005808577,0.0003220195,0.0004484237,0.0008178288,0.00006445654,0.0002323009,0.0006676772,0.0002363632],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003845544,"about_ca_system_score_gemma":0.0002348744,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003731064,"about_ca_topic_score_gemma":0.00006734321,"domain_scores_codex":[0.9983225,0.0006847736,0.0003528233,0.0001210689,0.00009121487,0.0004275434],"domain_scores_gemma":[0.9987677,0.0002029917,0.0002256236,0.0004904987,0.000255775,0.00005735401],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001776342,0.0001654179,0.01164868,0.000008347641,0.0004009932,0.000003598869,0.0003488121,0.0000166892,0.8520684,0.0008164084,0.1328221,0.001522906],"study_design_scores_gemma":[0.003336854,0.0004458787,0.04593264,0.0001608842,0.0003659797,0.004897577,0.001637996,0.000008495103,0.1126551,0.005302372,0.824849,0.0004071724],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9830542,0.008800444,0.00004104824,0.005382664,0.001578507,0.0002468425,0.00003032054,0.00002027294,0.0008457587],"genre_scores_gemma":[0.9979054,0.0005500835,0.000008204056,0.0001665432,0.0001289393,0.000004535734,0.000005291615,0.0000141413,0.001216877],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7394133,"threshold_uncertainty_score":0.8486124,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01992520261868839,"score_gpt":0.2646481390480274,"score_spread":0.244722936429339,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}