{"id":"W2199498800","doi":"10.1038/ismej.2015.189","title":"The biogeography of the atlantic salmon (<i>Salmo salar</i>) gut microbiome","year":2015,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":405,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ministère des Ressources naturelles et des Forêts (Québec); Université Laval","funders":"National Marine Fisheries Service; Natural Sciences and Engineering Research Council of Canada; National Oceanic and Atmospheric Administration; Inland Fisheries Ireland; University College Cork","keywords":"Biology; Salmo; Microbiome; Vertebrate; Ecology; Phylotype; Zoology; Microbial ecology; Fishery; Phylogenetics; Fish <Actinopterygii>; Bacteria; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002531892,0.00008687478,0.0001461437,0.0006951695,0.0002737313,0.0004413783,0.000107147,0.0002202022,0.0006940766],"category_scores_gemma":[0.0003531447,0.000134683,0.0001990751,0.0004137024,0.0003293376,0.0002433372,0.0005285502,0.0001417266,0.0002006891],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002352484,"about_ca_system_score_gemma":0.0002743011,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005978658,"about_ca_topic_score_gemma":0.017044,"domain_scores_codex":[0.9998527,0.00003324757,0.00001376103,0.00004941856,0.00001765383,0.00003329691],"domain_scores_gemma":[0.9997255,0.00004211464,0.0001205844,0.00001650755,0.00004395791,0.00005123413],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001119214,0.00001398134,0.9289787,0.00003980726,0.00004286491,0.00004591573,0.0004670167,0.0001086243,0.06489833,0.00005336975,0.00006864408,0.005170813],"study_design_scores_gemma":[5.337579e-7,0.00003015775,0.999481,0.000002187431,0.000003745085,0.00002679487,0.0001418946,0.00005642755,0.0001757744,0.00000992092,0.00007031287,0.00000129674],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9994417,0.0001138394,0.00007216998,0.00001265201,7.662829e-7,0.000001974502,0.0001534342,0.000001553458,0.0002019915],"genre_scores_gemma":[0.9993718,0.00008240968,0.0001438091,0.00001831465,0.000002336405,0.000003645902,0.0002682102,0.000001673685,0.0001078209],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005978658,"threshold_uncertainty_score":0.01188767,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01992520261868839,"score_gpt":0.2646481390480274,"score_spread":0.244722936429339,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}