{"id":"W2201574065","doi":"10.1371/journal.pone.0139932","title":"Growth of Chitinophaga pinensis on Plant Cell Wall Glycans and Characterisation of a Glycoside Hydrolase Family 27 β-l-Arabinopyranosidase Implicated in Arabinogalactan Utilisation","year":2015,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Enzyme Production and Characterization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Vetenskapsrådet; Knut och Alice Wallenbergs Stiftelse; Natural Sciences and Engineering Research Council of Canada; Karolinska Institutet; Joint Genome Institute; Svenska Forskningsrådet Formas; Science for Life Laboratory; Strong","keywords":"Arabinogalactan; Glycoside hydrolase; Cell wall; Glycan; Biology; Hydrolase; Phylogenetic tree; Gene; Enzyme; Polysaccharide; Biochemistry; Bacteria; Genome; Microbiology; Genetics; Glycoprotein","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009188851,0.0002291582,0.0002487096,0.000312401,0.0001499362,0.0002988124,0.0001433629,0.0001709349,0.0003138608],"category_scores_gemma":[0.0001628516,0.0001207217,0.0002423359,0.0003437862,0.000176503,0.0001335996,0.0002733506,0.0002682973,0.0001908395],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001934309,"about_ca_system_score_gemma":0.0002997403,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004135154,"about_ca_topic_score_gemma":0.003054562,"domain_scores_codex":[0.9998873,0.00001067147,0.00001045628,0.00002872609,0.00003495856,0.00002779395],"domain_scores_gemma":[0.9998671,0.00003078407,0.00002624888,0.00002022499,0.0000215187,0.00003404836],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005506924,0.00002223064,0.001596795,0.00002482004,0.000002754313,0.0001135654,0.00004976164,0.00002549385,0.9970118,0.00002050642,0.00001634047,0.00106092],"study_design_scores_gemma":[0.00002105757,0.0009194607,0.341358,0.00002725475,0.00006109716,0.001749254,0.0006891816,0.001698575,0.6502688,0.0001644809,0.00301906,0.00002373776],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974073,0.0003797306,0.0003421964,0.00003122702,0.000007438218,0.00001848135,0.0007921727,0.0000129406,0.001008358],"genre_scores_gemma":[0.9949186,0.0003739121,0.001257508,0.00003245441,0.000008166274,0.00002342228,0.00188864,0.00001074475,0.00148649],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004135154,"threshold_uncertainty_score":0.008222163,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02954530332060745,"score_gpt":0.2085894954336671,"score_spread":0.1790441921130596,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}