{"id":"W2201574065","doi":"10.1371/journal.pone.0139932","title":"Growth of Chitinophaga pinensis on Plant Cell Wall Glycans and Characterisation of a Glycoside Hydrolase Family 27 β-l-Arabinopyranosidase Implicated in Arabinogalactan Utilisation","year":2015,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Enzyme Production and Characterization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Vetenskapsrådet; Knut och Alice Wallenbergs Stiftelse; Natural Sciences and Engineering Research Council of Canada; Karolinska Institutet; Joint Genome Institute; Svenska Forskningsrådet Formas; Science for Life Laboratory; Strong","keywords":"Arabinogalactan; Glycoside hydrolase; Cell wall; Glycan; Biology; Hydrolase; Phylogenetic tree; Gene; Enzyme; Polysaccharide; Biochemistry; Bacteria; Genome; Microbiology; Genetics; Glycoprotein","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001499108,0.0001393435,0.0002215226,0.0001227802,0.00001686236,0.000007984864,0.00006997402,0.000118807,0.000004459935],"category_scores_gemma":[0.00009904027,0.0001445215,0.00002914527,0.0001343044,0.0000529187,0.00001430749,0.00002816634,0.00007618569,0.000002794574],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002144623,"about_ca_system_score_gemma":0.00004880166,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006603346,"about_ca_topic_score_gemma":0.00001144513,"domain_scores_codex":[0.9989542,0.00007328654,0.0003548286,0.0002968453,0.0001867093,0.0001341827],"domain_scores_gemma":[0.9992713,0.000008790211,0.0002434967,0.0002210517,0.0001747501,0.0000805711],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006052771,0.0008898207,0.02132115,0.0001087065,0.00002857373,8.849142e-7,0.0002488924,0.000005156573,0.9766522,0.0000204372,0.00004907218,0.00006980624],"study_design_scores_gemma":[0.001171337,0.0005235837,0.09381945,0.00006157086,0.00003310681,0.000002047041,0.00004680362,0.0003490047,0.9038222,0.00002668853,0.00002330597,0.0001208323],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989592,0.00008770653,0.00003141353,0.0003255467,0.0000323878,0.000287687,0.00008339329,0.0000121017,0.0001805366],"genre_scores_gemma":[0.9985989,0.0002092796,0.0001236669,0.0001600729,0.00005491188,0.00001904763,0.0007603008,0.00001784687,0.00005591146],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07282996,"threshold_uncertainty_score":0.5893418,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02954530332060745,"score_gpt":0.2085894954336671,"score_spread":0.1790441921130596,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}