{"id":"W2204245756","doi":"10.1038/ncomms9821","title":"A coherent transcriptional feed-forward motif model for mediating auxin-sensitive PIN3 expression during lateral root development","year":2015,"lang":"en","type":"article","venue":"Nature Communications","topic":"Plant Molecular Biology Research","field":"Agricultural and Biological Sciences","cited_by":96,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"National Key Research and Development Program of China; Fonds Wetenschappelijk Onderzoek; Belgian Federal Science Policy Office; Division of Molecular and Cellular Biosciences; Natural Sciences and Engineering Research Council of Canada; Vlaamse regering; Universiteit Gent; Ministry of Education, Culture, Sports, Science and Technology; Bijzonder Onderzoeksfonds UGent; National Science Foundation","keywords":"Auxin; Cell biology; Transcription factor; Lateral root; Transcription (linguistics); Biology; Directionality; Arabidopsis; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003501232,0.0001251316,0.0001388707,0.00002203066,0.0004930485,0.00003725153,0.0006624964,0.0002601733,0.000005692426],"category_scores_gemma":[0.0001661226,0.00005738834,0.00007008423,0.0001372725,0.00006825096,0.0000830939,0.0002666482,0.0004917761,0.00000961548],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008763585,"about_ca_system_score_gemma":0.00006060916,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000009224118,"about_ca_topic_score_gemma":0.001594585,"domain_scores_codex":[0.998909,0.0001490441,0.0002063541,0.0002228602,0.0002423503,0.0002703753],"domain_scores_gemma":[0.9991282,0.0002131699,0.00006884275,0.000172726,0.0002723046,0.0001447613],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00009863837,0.000146121,0.00393322,0.000007130165,0.00003384868,0.000001623482,0.0009666912,0.0001681145,0.9915157,0.0005596445,0.0007810297,0.001788261],"study_design_scores_gemma":[0.003060099,0.0003640715,0.6095365,0.0002955074,0.00006746136,0.0001058384,0.001447921,0.1248464,0.2180997,0.002013766,0.03869094,0.001471894],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9939041,0.0006249663,0.0002893616,0.004148841,0.00006173195,0.0004480035,0.0001936272,0.00006680482,0.0002625224],"genre_scores_gemma":[0.9892896,0.00001954003,0.008588265,0.0001266108,0.00005902777,0.000153506,0.001523755,0.000001847383,0.0002378098],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.773416,"threshold_uncertainty_score":0.379218,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06569680200220891,"score_gpt":0.3021094449807127,"score_spread":0.2364126429785038,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}