{"id":"W2207345824","doi":"10.1186/s12861-015-0096-3","title":"Transcriptome profiling of bovine inner cell mass and trophectoderm derived from in vivo generated blastocysts","year":2015,"lang":"en","type":"article","venue":"BMC Developmental Biology","topic":"Reproductive Biology and Fertility","field":"Medicine","cited_by":54,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Inner cell mass; Transcriptome; Cell biology; Gene expression profiling; Epigenetics; Genetics; Microarray analysis techniques; Molecular biology; Gene; Embryo; Blastocyst; Gene expression; Embryogenesis","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002722369,0.0001634711,0.000414225,0.0001035362,0.00002129652,0.000002422575,0.00007076922,0.0002095761,0.00007942574],"category_scores_gemma":[0.000144412,0.0001288873,0.00002948526,0.0001663341,0.0002477361,0.00005575668,0.0000426215,0.0001371536,0.000009887054],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008951418,"about_ca_system_score_gemma":0.0003194461,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001009618,"about_ca_topic_score_gemma":0.00007265562,"domain_scores_codex":[0.9987317,0.0001486871,0.0003867814,0.0004471967,0.00006193637,0.0002236726],"domain_scores_gemma":[0.9995413,0.00003939511,0.00007483356,0.0001316853,0.0001076219,0.0001051665],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002681276,0.00007363147,0.3781479,0.00001852462,0.00002124824,0.00000568779,0.0003141966,4.304652e-7,0.6186066,0.00001008429,0.00001945234,0.0001010027],"study_design_scores_gemma":[0.002497122,0.0002833073,0.3234783,0.00001358179,0.00001393568,0.00001640599,0.0002896757,0.00003189329,0.6729155,0.0001570654,0.0001917109,0.0001115041],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9970067,0.000854569,0.0006790266,0.00007762745,0.000190163,0.0003926922,0.00003999962,0.00002435167,0.0007349376],"genre_scores_gemma":[0.9711074,0.00001719992,0.02838712,0.0001414493,0.00004679301,0.00002709798,0.0001513534,0.00001014274,0.0001115103],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05466965,"threshold_uncertainty_score":0.525587,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03898090869264946,"score_gpt":0.2660329694596803,"score_spread":0.2270520607670308,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}