{"id":"W2207408507","doi":"10.1111/mpp.12356","title":"Genome‐wide transcriptomic analyses provide insights into the lifestyle transition and effector repertoire of <i>Leptosphaeria maculans</i> during the colonization of <i>Brassica napus</i> seedlings","year":2015,"lang":"en","type":"article","venue":"Molecular Plant Pathology","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":80,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Saskatchewan Canola Development Commission","keywords":"Biology; Leptosphaeria maculans; WRKY protein domain; Transcriptome; Genetics; Elicitor; Effector; Gene; Jasmonic acid; Plant defense against herbivory; Arabidopsis; Gene expression; Cell biology; Mutant","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002221757,0.0001311176,0.0002317455,0.00002123305,0.0001840103,0.00002143174,0.0001978278,0.00009416111,0.00000725623],"category_scores_gemma":[0.00006764947,0.00004637423,0.00007858784,0.000207141,0.0001790535,0.00008084546,0.00003613616,0.0001443599,0.000001554575],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001738234,"about_ca_system_score_gemma":0.00001615893,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004017473,"about_ca_topic_score_gemma":0.000541238,"domain_scores_codex":[0.9988801,0.0003864283,0.0002820582,0.0001912177,0.0001159052,0.000144233],"domain_scores_gemma":[0.9994372,0.0001713042,0.0001628152,0.00009907434,0.00008554853,0.00004407602],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001261404,0.00005261978,0.0007908464,0.00002185645,0.0000325287,0.0000304411,0.001896361,0.00009093749,0.9967118,0.00001342898,0.0000247815,0.0002082591],"study_design_scores_gemma":[0.0003501223,0.000351843,0.05383648,0.00004371064,0.00008721867,0.0002733792,0.0007377954,0.0002261037,0.9420001,0.0000699706,0.001886748,0.0001365214],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975888,0.0008970721,0.0001473246,0.0008636127,0.00007559753,0.0002793287,0.00009537797,0.00001853222,0.00003432046],"genre_scores_gemma":[0.9992337,0.0001307147,0.00003821789,0.0003027942,0.00002454894,0.00001786373,0.0002367493,0.000001918398,0.0000135229],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05471169,"threshold_uncertainty_score":0.1891086,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01140886066420563,"score_gpt":0.2140100522501955,"score_spread":0.2026011915859899,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}